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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  NEGATIVE-STAIN ELECTRON MICROSCOPY OF E. COLI CLPB OF Y503D HYPERACTIVE MUTANT (BAP FORM BOUND TO CLPP)
 
Authors :  M. Carroni, E. Kummer, Y. Oguchi, D. K. Clare, P. Wendler, I. Sinning, J. A. Mogk, B. Bukau, H. R. Saibil
Date :  13 May 14  (Deposition) - 04 Jun 14  (Release) - 04 Jun 14  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  20.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Chaperone, Disaggregase, Clpb, Bap, Y503D Hyperactive Mutant, Coiled- Coil Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Carroni, E. Kummer, Y. Oguchi, P. Wendler, D. K. Clare, I. Sinning, J. Kopp, A. Mogk, B. Bukau, H. R. Saibil
Head-To-Tail Interactions Of The Coiled-Coil Domains Regulate Clpb Activity And Cooperation With Hsp70 In Protein Disaggregation.
Elife V. 3 02481 2014
PubMed-ID: 24843029  |  Reference-DOI: 10.7554/ELIFE.02481

(-) Compounds

Molecule 1 - CHAPERONE PROTEIN CLPB
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDS56
    Expression System Strain: MC4100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Other Details: THE PROTEIN IS ENGINEERED TO BIND TO CLPP.
    Synonym: HEAT SHOCK PROTEIN F84.1, CLPB

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 102)

Asymmetric/Biological Unit (1, 102)
No.NameCountTypeFull Name
1MSE102Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4D2X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D2X)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Val A:548 -Ser A:549
2Val B:548 -Ser B:549
3Val C:548 -Ser C:549
4Val D:548 -Ser D:549
5Val E:548 -Ser E:549
6Val F:548 -Ser F:549

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D2X)

(-) PROSITE Motifs  (2, 12)

Asymmetric/Biological Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLPAB_1PS00870 Chaperonins clpA/B signature 1.CLPB_ECOLI294-306
 
 
 
 
 		  6A:294-306
B:294-306
C:294-306
D:294-306
E:294-306
F:294-306
2CLPAB_2PS00871 Chaperonins clpA/B signature 2.CLPB_ECOLI631-649
 
 
 
 
 		  6A:631-649
B:631-649
C:631-649
D:631-649
E:631-649
F:631-649

(-) Exons   (0, 0)

(no "Exon" information available for 4D2X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:638
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:699
                                   168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848         
           CLPB_ECOLI   159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhh-----------------hhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2x A 159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEK-----------------IAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
                                   168       178       188       198       208       218       228       238   |  |  -       258       268       278    |  | -     | 298       308       318       328       338       348       358       368       378       388       398    |  408       418       428 ||      - |  |  448       458       | -         -     | 488  |    498       508       518     | 528       538       548  ||   558   |   568       578       588       598       608       618   |   628|    | 638       648|        -|      668       678       688       698       708       718       728|  |   738       748       758       768       778       788       798       808       818       828       838       848         
                                                                                                             242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                    466               484    491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                        
                                                                                                                245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     634-MSE                                                                                                737-MSE                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         638-MSE                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:655
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:699
                                   168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848         
           CLPB_ECOLI   159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2x B 159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
                                   168       178       188       198       208       218       228       238   |  |  -       258       268       278    |  | -     | 298       308       318       328       338       348       358       368       378       388       398    |  408       418       428 ||      - |  |  448       458       468       478       488  |    498       508       518     | 528       538       548  ||   558   |   568       578       588       598       608       618   |   628|    | 638       648|        -|      668       678       688       698       708       718       728|  |   738       748       758       768       778       788       798       808       818       828       838       848         
                                                                                                             242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                        
                                                                                                                245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     634-MSE                                                                                                737-MSE                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         638-MSE                                                                                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:655
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:699
                                   168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848         
           CLPB_ECOLI   159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2x C 159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
                                   168       178       188       198       208       218       228       238   |  |  -       258       268       278    |  | -     | 298       308       318       328       338       348       358       368       378       388       398    |  408       418       428 ||      - |  |  448       458       468       478       488  |    498       508       518     | 528       538       548  ||   558   |   568       578       588       598       608       618   |   628|    | 638       648|        -|      668       678       688       698       708       718       728|  |   738       748       758       768       778       788       798       808       818       828       838       848         
                                                                                                             242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                        
                                                                                                                245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     634-MSE                                                                                                737-MSE                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         638-MSE                                                                                                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:655
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:699
                                   168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848         
           CLPB_ECOLI   159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2x D 159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
                                   168       178       188       198       208       218       228       238   |  |  -       258       268       278    |  | -     | 298       308       318       328       338       348       358       368       378       388       398    |  408       418       428 ||      - |  |  448       458       468       478       488  |    498       508       518     | 528       538       548  ||   558   |   568       578       588       598       608       618   |   628|    | 638       648|        -|      668       678       688       698       708       718       728|  |   738       748       758       768       778       788       798       808       818       828       838       848         
                                                                                                             242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                        
                                                                                                                245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     634-MSE                                                                                                737-MSE                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         638-MSE                                                                                                                                                                                                                       


Chain E from PDB  Type:PROTEIN  Length:655
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:699
                                   168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848         
           CLPB_ECOLI   159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2x E 159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
                                   168       178       188       198       208       218       228       238   |  |  -       258       268       278    |  | -     | 298       308       318       328       338       348       358       368       378       388       398    |  408       418       428 ||      - |  |  448       458       468       478       488  |    498       508       518     | 528       538       548  ||   558   |   568       578       588       598       608       618   |   628|    | 638       648|        -|      668       678       688       698       708       718       728|  |   738       748       758       768       778       788       798       808       818       828       838       848         
                                                                                                             242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                        
                                                                                                                245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     634-MSE                                                                                                737-MSE                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         638-MSE                                                                                                                                                                                                                       


Chain F from PDB  Type:PROTEIN  Length:655
 aligned with CLPB_ECOLI | P63284 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:699
                                   168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848         
           CLPB_ECOLI   159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeehhhhhh..........hhhhhhhhhhhh................hhhhhhhhhhhhhh............eee.....------------...hhhhhhhh...........hhh....-------..hhhhhhhhh...........hhhhhhhhh..hhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...--------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...------........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh..........hhh.....hhhhhh..---------..hhhhhhhh...eeeee..hhh..hhhhhhhhhhhhh.eee.....eee...eeeee...hhhhhhhh..--..hhhhhhhhhhhhhhh..hhhhhh...........hhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh........eeeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------CLPAB_1      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CLPAB_2            ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d2x F 159 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDmGAL------------RLKGVLNDLAKQEGNVILFIDELHTmVGA-------DAGNmLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRmQIDSKPEELDRLDRRIIQLKLEQQALmK--------RLDmLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARR------mSELQYGKIPELEKQLEAATQLEGKTmRLLRNKVTDAEIAEVLARWTGIPVSRmmESEREKLLRmEQELHHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFmFDSDEAmVRIDmSEFmEKHSVSRLVGA---------GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVImTSNLGSDLIQERF--LDYAHmKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAVQ 857
                                   168       178       188       198       208       218       228       238   |  |  -       258       268       278    |  | -     | 298       308       318       328       338       348       358       368       378       388       398    |  408       418       428 ||      - |  |  448       458       468       478       488  |    498       508       518     | 528       538       548  ||   558   |   568       578       588       598       608       618   |   628|    | 638       648|        -|      668       678       688       698       708       718       728|  |   738       748       758       768       778       788       798       808       818       828       838       848         
                                                                                                             242-MSE         258                      283-MSE    294   |                                                                                                      403-MSE                    430-MSE   440  |                                             491      |                       524-MSE                    551-MSE    562-MSE                                                     622-MSE  |    |   |        649       659                                                      716-MSE      729  |    |                                                                                                                        
                                                                                                                245                                      286         298-MSE                                                                                                                              431         443-MSE                                                498-MSE                                               552-MSE                                                                      629-MSE|   |                                                                                           732    |                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     634-MSE                                                                                                737-MSE                                                                                                                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         638-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D2X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D2X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D2X)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (CLPB_ECOLI | P63284)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0042623    ATPase activity, coupled    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction directly drives some other reaction, for example ion transport across a membrane.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0019538    protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
    GO:0016485    protein processing    Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
    GO:0006986    response to unfolded protein    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Cis Peptide Bonds
    Val A:548 - Ser A:549   [ RasMol ]  
    Val B:548 - Ser B:549   [ RasMol ]  
    Val C:548 - Ser C:549   [ RasMol ]  
    Val D:548 - Ser D:549   [ RasMol ]  
    Val E:548 - Ser E:549   [ RasMol ]  
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  4d2x
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  CLPB_ECOLI | P63284
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPB_ECOLI | P63284: 1jbk 1khy 4ciu 4d2q 4d2u

(-) Related Entries Specified in the PDB File

4d2q NEGATIVE-STAIN ELECTRON MICROSCOPY OF E. COLI CLPB MUTANT E432A (BAP FORM BOUND TO CLPP)
4d2u NEGATIVE-STAIN ELECTRON MICROSCOPY OF E. COLI CLPB (BAP FORM BOUND TO CLPP) RELATED ENTRIES RELATED ID: EMD-2559 RELATED DB: EMDB