4CY8 - JenaLib

Title :   2-HYDROXYBIPHENYL 3-MONOOXYGENASE (HBPA) IN COMPLEX WITH FAD

Authors :   C. N. Jensen, J. E. Farrugia, A. Frank, H. Man, S. Hart, J. P. Turkenburg,

Date :   10 Apr 14 (Deposition) - 18 Mar 15 (Release) - 22 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.03

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Oxidoreductase, Flavoprotein, Biotransformations, Hydroxylation, Flavin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. N. Jensen, T. Mielke, J. E. Farrugia, A. Frank, H. Man, S. Hart, J. P. Turkenburg, G. Grogan
Structures Of The Apo And Fad-Bound Forms Of 2- Hydroxybiphenyl 3-Monooxygenase (Hbpa) Locate Activity Hotspots Identified By Using Directed Evolution.
Chembiochem V. 16 968 2015
PubMed-ID: 25737306 | Reference-DOI: 10.1002/CBIC.201402701

Compounds

Molecule 1 - 2-HYDROXYBIPHENYL 3-MONOOXYGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.14.13.44
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PETYSBLIC-3C
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Scientific	:	PSEUDOMONAS NITROREDUCENS HBP1
	Organism Taxid	:	1437882

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:13 , ALA A:14 , GLY A:15 , PRO A:16 , ALA A:17 , ASN A:36 , ARG A:37 , TRP A:38 , ARG A:46 , SER A:47 , HIS A:48 , ILE A:49 , GLN A:120 , THR A:142 , GLU A:143 , TYR A:144 , ALA A:177 , ASP A:178 , GLY A:179 , GLY A:312 , ASP A:313 , GLY A:323 , GLY A:325 , LEU A:326 , ASN A:327 , HOH A:2008 , HOH A:2041 , HOH A:2115 , HOH A:2180 , HOH A:2183 , HOH A:2184 , HOH A:2415	BINDING SITE FOR RESIDUE FDA A1586
2	AC2	SOFTWARE	GLY D:13 , ALA D:14 , GLY D:15 , PRO D:16 , ALA D:17 , ASN D:36 , ARG D:37 , TRP D:38 , ARG D:46 , SER D:47 , HIS D:48 , ILE D:49 , GLN D:120 , THR D:142 , GLU D:143 , TYR D:144 , ALA D:177 , ASP D:178 , GLY D:312 , ASP D:313 , GLY D:323 , GLY D:325 , LEU D:326 , ASN D:327 , HOH D:2006 , HOH D:2033 , HOH D:2100 , HOH D:2139 , HOH D:2141 , HOH D:2142	BINDING SITE FOR RESIDUE FDA D1586
3	AC3	SOFTWARE	GLY B:13 , ALA B:14 , GLY B:15 , PRO B:16 , ALA B:17 , ASN B:36 , ARG B:37 , TRP B:38 , ARG B:46 , SER B:47 , HIS B:48 , ILE B:49 , GLN B:120 , THR B:142 , GLU B:143 , TYR B:144 , ALA B:177 , ASP B:178 , GLY B:312 , ASP B:313 , PRO B:320 , GLY B:323 , GLY B:325 , LEU B:326 , ASN B:327 , SER B:329 , HOH B:2014 , HOH B:2041 , HOH B:2113 , HOH B:2171 , HOH B:2173 , HOH B:2175	BINDING SITE FOR RESIDUE FDA B1586
4	AC4	SOFTWARE	GLY C:13 , ALA C:14 , GLY C:15 , PRO C:16 , ALA C:17 , ASN C:36 , ARG C:37 , TRP C:38 , ARG C:46 , SER C:47 , HIS C:48 , ILE C:49 , GLN C:120 , THR C:142 , GLU C:143 , TYR C:144 , ALA C:177 , ASP C:178 , GLY C:312 , ASP C:313 , GLY C:323 , GLY C:325 , LEU C:326 , ASN C:327 , HOH C:2007 , HOH C:2038 , HOH C:2049 , HOH C:2112 , HOH C:2152 , HOH C:2154 , HOH C:2157 , HOH C:2402	BINDING SITE FOR RESIDUE FDA C1586

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:539
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeee.............eehhhhhhhhhhh.hhhhhhhhhee.hhh.eeeee......eeeeee....hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhh.eee..eeeeeeeee..eeeeeeee.....eeeeeeeeeee.....hhhhhhh...ee..eeeee.......eeeee..eeeee..eeeee....hhhhhh..........ee......eee...ee..eee.hhh.ee......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.......................................eeee..eeee.hhhh....eeeeee...hhhhhhhhhhhhhhh..eeeeee..........hhhhhhh......eeee.....eeeee...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cy8 A   4 SAETDVLIVGAGPAGAMSATLLASLGIRSLMINRWRSTSPGPRSHIINQRTMEILRDIGLEESAKSLAVPKEYMGEHVYATSLAGEEFGRIPAWASHPQAHAEHELASPSRYCDLPQLYFEPMVVSEAALRGADVRFLTEYLGHVEDQDGVTARLLDHVSGAEYEVRAKYIIGADGAHSLVAQNAGLPFEGINIEFSADLSSGDMYWMFRGVAALRMNKWICVEEKKIIHEIIGTDEIPEVGPISTWTINQQYAVRNTSGRVFCMGDAVHRHTPMGGLGLNTSVQDAYNLAWKLALVLKGQAAPTLLDSYDAERSPVAKQIVERAFKSLSTFPPVFEALSLPPAPTESEMAEALVRLKDASEEGAKRRAALRKAMDATIIGLGGGHGVELNQRYVSRAVFPDGTPDPGFVRDQEFFYQASTRPGAHLPHVWLTENQRRISTLDLCGKGRFTLLTGLSGAAWKHEAEQVSQSLGIELKVCVIGPGQEFVDTYGEYAKISEIGESGALLVRPDMFIAFRAKDASREGLEQLNVAVKSILGR 585
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193||     212 ||    228|     |250  |||| 275       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576         
                                                                                                                                                                                                                        194|       214|    228|   243|  253|||          284|                                                                                                                                                                                                                                                                                                           
                                                                                                                                                                                                                         204        221     237    248   268||           286                                                                                                                                                                                                                                                                                                           
                                                                                                                                                                                                                                                          269|                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                           271

Chain B from PDB  Type:PROTEIN  Length:535
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeee.............eehhhhhhhhhhh.hhhhhhhhhee.hhh.eeeee......eeeeee....hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhh.eee..eeeeeeeee..eeeeeeee.....eeeeeeeeeee.....hhhhhhh...ee..eeeee....eeeee..eeeee..eeee.....hhhhhh..........eee.....eee...ee..eee.hhh.ee......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.......................................eeee..eeee.hhhh....eeeeee...hhhhhhhhhhhhhhh..eeeeee..........hhhhhhh......eeee.....eeeee...hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cy8 B   4 SAETDVLIVGAGPAGAMSATLLASLGIRSLMINRWRSTSPGPRSHIINQRTMEILRDIGLEESAKSLAVPKEYMGEHVYATSLAGEEFGRIPAWASHPQAHAEHELASPSRYCDLPQLYFEPMVVSEAALRGADVRFLTEYLGHVEDQDGVTARLLDHVSGAEYEVRAKYIIGADGAHSLVAQNAGLPFEGSINIEFSADDMYWMFRGVAALRMKWICVEEAKKIIHEIIGTDEIPEVGPISTWTINQQYAVRNTSGRVFCMGDAVHRHTPMGGLGLNTSVQDAYNLAWKLALVLKGQAAPTLLDSYDAERSPVAKQIVERAFKSLSTFPPVFEALSLPPATESEMAEALVRLKDASEEGAKRRAALRKAMDATIIGLGGGHGVELNQRYVSRAVFPDGTPDPGFVRDQEFFYQASTRPGAHLPHVWLTENQRRISTLDLCGKGRFTLLTGLSGAAWKHEAEQVSQSLGIELKVCVIGPGQEFVDTYGEYAKISEIGESGALLVRPDMFIAFRAKDASREGLEQLNVAVKSILGR 585
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193||     211|     |239   ||  268       278     ||289       299       309       319       329       339       349       359       369       379       389||     400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580     
                                                                                                                                                                                                                        194|     211|   228|   243| 253|             284|                                                                                                     390|                                                                                                                                                                                                 
                                                                                                                                                                                                                         203      222    237    249  268              286                                                                                                      392

Chain C from PDB  Type:PROTEIN  Length:530
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeee.............eehhhhhhhhhhh.hhhhhhhhhee.hhh.eeeee......eeeeee....hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhh.eee..eeeeeeeee..eeeeeeee.....eeeeeeeeeee.....hhhhhhh...ee..ee......eeeee..eeee...ee.....hhhhhh..........ee......eee...ee..eee.hhh.ee......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.......................................eeee..eeee.hhhh....eeeeee...hhhhhhhhhhhhhhh..eeeeee..........hhhhhhh......eeee.....eeeee...hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cy8 C   4 SAETDVLIVGAGPAGAMSATLLASLGIRSLMINRWRSTSPGPRSHIINQRTMEILRDIGLEESAKSLAVPKEYMGEHVYATSLAGEEFGRIPAWASHPQAHAEHELASPSRYCDLPQLYFEPMVVSEAALRGADVRFLTEYLGHVEDQDGVTARLLDHVSGAEYEVRAKYIIGADGAHSLVAQNAGLPFEGINIEFSADDMYWMFRGVAALRMICVEEAKKIIHEIIGTDEIPVVGPISTWTINQQYAVRNTSGRVFCMGDAVHRHTPMGGLGLNTSVQDAYNLAWKLALVLKGQAAPTLLDSYDAERSPVAKQIVERAFKSLSTFPPVFEALSLPTESEMAEALVRLKDASEEGAKRRAALRKAMDATIIGLGGGHGVELNQRYVSRAVFPDGTPDPGFVRDQEFFYQASTRPGAHLPHVWLTENQRRISTLDLCGKGRFTLLTGLSGAAWKHEAEQVSQSLGIELKVCVIGPGQEFVDTYGEYAKISEIGESGALLVRPDMFIAFRAKDASREGLEQLNVAVKSILGR 585
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193||     222     ||240  || ||271       281   ||  292       302       312       322       332       342       352       362       372       382    || 395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585
                                                                                                                                                                                                                        194|    211|   228|   243| ||              285|                                                                                                 387|                                                                                                                                                                                                  
                                                                                                                                                                                                                         204     222    237    251 ||               287                                                                                                  391                                                                                                                                                                                                  
                                                                                                                                                                                                                                                 253|                                                                                                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                  268

Chain D from PDB  Type:PROTEIN  Length:537
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhh...eeee.............eehhhhhhhhhhh.hhhhhhhhhee.hhh.eeeee......eeeeee....hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhh.eee..eeeeeeeee..eeeeeeee.....eeeeeeeeeee.....hhhhhhh...ee...eeeeee....eeeee..eeeee..eeeee.....hhhhhh.........eee.....eee...ee..eee.hhh.ee......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.......................................eeee..eeee.hhhh....eeeeee...hhhhhhhhhhhhhhh..eeeeee..........hhhhhhh......eeee.....eeeee...hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cy8 D   5 AETDVLIVGAGPAGAMSATLLASLGIRSLMINRWRSTSPGPRSHIINQRTMEILRDIGLEESAKSLAVPKEYMGEHVYATSLAGEEFGRIPAWASHPQAHAEHELASPSRYCDLPQLYFEPMVVSEAALRGADVRFLTEYLGHVEDQDGVTARLLDHVSGAEYEVRAKYIIGADGAHSLVAQNAGLPFEGQSINIEFSADLDMYWMFRGVAALRMNKWICVEEAKKIIHEIIGTDEIPVGPISTWTINQQYAVRNTSGRVFCMGDAVHRHTPMGGLGLNTSVQDAYNLAWKLALVLKGQAAPTLLDSYDAERSPVAKQIVERAFKSLSTFPPVFEALSLPPAPTESEMAEALVRLKDASEEGAKRRAALRKAMDATIIGLGGGHGVELNQRYVSRAVFPDGTPDPGFVRDQEFFYQASTRPGAHLPHVWLTENQRRISTLDLCGKGRFTLLTGLSGAAWKHEAEQVSQSLGIELKVCVIGPGQEFVDTYGEYAKISEIGESGALLVRPDMFIAFRAKDASREGLEQLNVAVKSILGR 585
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194||     211||     238    || 252||     276       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       
                                                                                                                                                                                                                        195|      212|   228|   243|  253|             284|                                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                         203       222    237    248   268              287

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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	Cis Peptide Bonds
		Gly A:288 - Pro A:289	[ RasMol ]
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