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(-) Description

Title :  APO STRUCTURE OF 2-HYDROXYBIPHENYL 3-MONOOXYGENASE HBPA
 
Authors :  C. N. Jensen, J. E. Farrugia, A. Frank, H. Man, S. Hart, J. P. Turkenburg,
Date :  10 Apr 14  (Deposition) - 18 Mar 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.76
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oxidoreductase, Flavoprotein, Fad, Hydroxylation, Flavin, Nadh (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. N. Jensen, T. Mielke, J. E. Farrugia, A. Frank, H. Man, S. Hart, J. P. Turkenburg, G. Grogan
Structures Of The Apo And Fad-Bound Forms Of 2- Hydroxybiphenyl 3-Monooxygenase (Hbpa) Locate Activity Hotspots Identified By Using Directed Evolution.
Chembiochem V. 16 968 2015
PubMed-ID: 25737306  |  Reference-DOI: 10.1002/CBIC.201402701

(-) Compounds

Molecule 1 - 2-HYDROXYBIPHENYL-3-MONOOXYGENASE
    Chains: A, B, C, D
    EC Number: 1.14.13.44
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETYSBLIC-3C
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: PSEUDOMONAS NITROREDUCENS HBP1
    Organism Taxid: 1437882

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4CY6)

(-) Sites  (0, 0)

(no "Site" information available for 4CY6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CY6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CY6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CY6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CY6)

(-) Exons   (0, 0)

(no "Exon" information available for 4CY6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:561
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeee.............eehhhhhhhhhhh.hhhhhhhhhee.hhh.eeeee......eeeeee....hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhh.eee..eeeeeeee....eeeeeee.....eeeeeeeeeee.....hhhhhhhh..eeee......eeeeeee..hhhhhh.....eeeee...eeeeeeee...eeee......hhhhhhhh......eeeeeeee...eeee...ee..eee.....eee....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.......................................eeee..eeee.hhhh....eeeeee...hhhhhhhhhhhhhh...eeeeee.....ee...hhhhhhh......eeee.....eeeee...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cy6 A   4 SAETDVLIVGAGPAGAMSATLLASLGIRSLMINRWRSTSPGPRSHIINQRTMEILRDIGLEESAKSLAVPKEYMGEHVYATSLAGEEFGRIPAWASHPQAHAEHELASPSRYCDLPQLYFEPMVVSEAALRGADVRFLTEYLGHVEDQDGVTARLLDHVSGAEYEVRAKYIIGADGAHSLVAQNAGLPFEGQMGIGDGSINIEFSADLSSLCEHRKGDMYWMFRVGVAALRMIRPWNKWICVWEEAKKIIHEIIGTDEIPVEVGPISTWTINQQYAVRNTSGRVFCMGDAVHRHTPMGGLGLNTSVQDAYNLAWKLALVLKGQAAPTLLDSYDAERSPVAKQIVERAFKSLSTFPPVFEALSLPPAPTESEMAEALVRLKDASEEGAKRRAALRKAMDATIIGLGGGHGVELNQRYVSRAVFPDGTPDPGFVRDQEFFYQASTRPGAHLPHVWLTENQRRISTLDLCGKGRFTLLTGLSGAAWKHEAEQVSQSLGIELKVCVIGPGQEFVDTYGEYAKISEIGESGALLVRPDMFIAFRAKDASREGLEQLNVAVKSILGR 585
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      |204       214       224   ||  241       251  ||   274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584 
                                                                                                                                                                                                                              200|                       228|               254|                                                                                                                                                                                                                                                                                                                             
                                                                                                                                                                                                                               202                        236                268                                                                                                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:555
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeeee..........eehhhhhhhhhhh.hhhhhhhhhee.hhh.eeeee......eeeeee....hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhh.eeee.eeeeeeee....eeeeeee.....eeeeeeeeeee.....hhhhhhhh..eeee......eeeeeee..hhhhhh.....eeee...eeeeee...eeee......hhhhhhhh.....eeeeeeee...eeee...ee..eee.....eee....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.......................................eeee..eeee.hhhh....eeeeee...hhhhhhhhhhhhhh...eeeeee.....ee...hhhhhhh......eeee.....eeeee...hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cy6 B   4 SAETDVLIVGAGPAGAMSATLLASLGIRSLMINRWRSTSPRSHIINQRTMEILRDIGLEESAKSLAVPKEYMGEHVYATSLAGEEFGRIPAWASHPQAHAEHELASPSRYCDLPQLYFEPMVVSEAALRGADVRFLTEYLGHVEDQDGVTARLLDHVSGAEYEVRAKYIIGADGAHSLVAQNAGLPFEGQMGIGSGSINIEFSADLSSLCEHRKGDMYWMFRAALRMIRPWNKWICVWEEAKKIIHEIIGDEIPVEVGPISTWTINQQYAVRNTSGRVFCMGDAVHRHTPMGGLGLNTSVQDAYNLAWKLALVLKGQAAPTLLDSYDAERSPVAKQIVERAFKSLSTFPPVFEALSLPPAPTESEMAEALVRLKDASEEGAKRRAALRKAMDATIIGLGGGHGVELNQRYVSRAVFPDGTPDPGFVRDQEFFYQASTRPGAHLPHVWLTENQRRISTLDLCGKGRFTLLTGLSGAAWKHEAEQVSQSLGIELKVCVIGPGQEFVDTYGEYAKISEIGESGALLVRPDMFIAFRAKDASREGLEQLNVAVKSILGR 585
                                    13        23        33        43|       55        65        75        85        95       105       115       125       135       145       155       165       175       185       195   ||  206       216       226 ||    246       269       279|      290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580     
                                                                  43|                                                                                                                                                      199|                        228|            254|        279|                                                                                                                                                                                                                                                                                                                
                                                                   46                                                                                                                                                       201                         239             268         281                                                                                                                                                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:554
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeee............eehhhhhhhhhhh.hhhhhhhhhee.hhh.eeeee......eeeeee....hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhh.eee..eeeeeeee....eeeeeee.....eeeeeeeeeee.....hhhhhhhh..eeee......eeeee..hhhhhh.....eeee...eeeeee...eeee......hhhhhhhh......eeeeee....eeee...ee..eee.....eee....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.......................................eeee..eeee.hhhh....eeeeee...hhhhhhhhhhhhhh...eeeeee..........hhhhhhh......eeee.....eeeee...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cy6 C   4 SAETDVLIVGAGPAGAMSATLLASLGIRSLMINRWRSTSPGRSHIINQRTMEILRDIGLEESAKSLAVPKEYMGEHVYATSLAGEEFGRIPAWASHPQAHAEHELASPSRYCDLPQLYFEPMVVSEAALRGADVRFLTEYLGHVEDQDGVTARLLDHVSGAEYEVRAKYIIGADGAHSLVAQNAGLPFEGQMGIGSINIEFSADLSSLCEHRKGDMYWMFRAALRMIRPWNKWICVWEEAKKIIHEIIGTDEIPVEVGPISTTINQQYAVRNTSGRVFCMGDAVHRHTPMGGLGLNTSVQDAYNLAWKLALVLKGQAAPTLLDSYDAERSPVAKQIVERAFKSLSTFPPVFEALSLPPAPTESEMAEALVRLKDASEEGAKRRAALRKAMDATIIGLGGGHGVELNQRYVSRAVFPDGTPDPGFVRDQEFFYQASTRPGAHLPHVWLTENQRRISTLDLCGKGRFTLLTGLSGAAWKHEAEQVSQSLGIELKVCVIGPGQEFVDTYGEYAKISEIGESGALLVRPDMFIAFRAKDASREGLEQLNVAVKSILGR 585
                                    13        23        33        43||      54        64        74        84        94       104       114       124       134       144       154       164       174       184       194    || 207       217       227||     247      |270       280       290 ||    301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581    
                                                                   44|                                                                                                                                                      199|                      228|            254|                     292|                                                                                                                                                                                                                                                                                                   
                                                                    46                                                                                                                                                       203                       239             268                      294                                                                                                                                                                                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:553
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhh...eeee............eehhhhhhhhhhh.hhhhhhhhhee.hhh.eeeee......eeeeee....hhhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhh.eee..eeeeeeee....eeeeeee.....eeeeeeeeeee.....hhhhhhhh..eeee.....eeeeee..hhhhhh.....eeee..eeeeee...eeee......hhhhhhhh......eeeeeee....eeee...ee..eee.....eee....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.......................................eeee..eeee.hhhh....eeeeee...hhhhhhhhhhhhhh...eeeeee.....ee...hhhhhhh......eeee.....eeeee...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cy6 D   5 AETDVLIVGAGPAGAMSATLLASLGIRSLMINRWRSTSPGRSHIINQRTMEILRDIGLEESAKSLAVPKEYMGEHVYATSLAGEEFGRIPAWASHPQAHAEHELASPSRYCDLPQLYFEPMVVSEAALRGADVRFLTEYLGHVEDQDGVTARLLDHVSGAEYEVRAKYIIGADGAHSLVAQNAGLPFEGQMGIGSINIEFSADLSSLCEHRKGDMYWMFAALRMIRPWNKWICVWEEAKKIIHEIIGTDEIPVEVGPISTWTINQQYAVRNTSGRVFCMGDAVHRHTPMGGLGLNTSVQDAYNLAWKLALVLKGQAAPTLLDSYDAERSPVAKQIVERAFKSLSTFPPVFEALSLPPAPTESEMAEALVRLKDASEEGAKRRAALRKAMDATIIGLGGGHGVELNQRYVSRAVFPDGTPDPGFVRDQEFFYQASTRPGAHLPHVWLTENQRRISTLDLCGKGRFTLLTGLSGAAWKHEAEQVSQSLGIELKVCVIGPGQEFVDTYGEYAKISEIGESGALLVRPDMFIAFRAKDASREGLEQLNVAVKSILGR 585
                                    14        24        34        44|       55        65        75        85        95       105       115       125       135       145       155       165       175       185       195   ||  208       218       239       249    || 272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582   
                                                                  44|                                                                                                                                                      199|                     227|            254|                                                                                                                                                                                                                                                                                                                             
                                                                   46                                                                                                                                                       203                      239             268
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CY6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CY6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CY6)

(-) Gene Ontology  (4, 4)

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        O06647_9PSED | O06647: 4cy8 4z2r 4z2t 4z2u 5brt

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