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(-) Description

Title :  THE 5-COORDINATE PROXIMAL NO COMPLEX OF CYTOCHROME C PRIME FROM SHEWANELLA FRIGIDIMARINA
 
Authors :  A. A. Manole, D. Kekilli, P. S. Dobbin, M. A. Hough
Date :  04 Apr 14  (Deposition) - 08 Apr 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Electron Transport, Nitrosyl, Proximal, Gas Sensor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Manole, D. Kekilli, D. A. Svistunenko, M. T. Wilson, P. S. Dobbin, M. A. Hough
Conformational Control Of The Binding Of Diatomic Gases To Cytochrome C'.
J. Biol. Inorg. Chem. V. 20 675 2015
PubMed-ID: 25792378  |  Reference-DOI: 10.1007/S00775-015-1253-7

(-) Compounds

Molecule 1 - CYTOCHROME C, CLASS II
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMMB503EH
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 22-149
    Organism Scientific: SHEWANELLA FRIGIDIMARINA
    Organism Taxid: 56812
    Synonym: CYTOCHROME C PRIME

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
2HEC2Ligand/IonHEME C
3NO2Ligand/IonNITRIC OXIDE
4SO42Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:12 , GLN A:13 , PHE A:16 , ILE A:19 , ALA A:20 , PHE A:59 , THR A:68 , GLU A:69 , MET A:85 , PHE A:88 , SER A:117 , CYS A:118 , CYS A:121 , LYS A:126 , NO A:1130 , HOH A:2165 , HOH A:2166BINDING SITE FOR RESIDUE HEC A1129
02AC2SOFTWAREHIS A:122 , HEC A:1129BINDING SITE FOR RESIDUE NO A1130
03AC3SOFTWAREARG B:12 , GLN B:13 , PHE B:16 , ALA B:20 , PHE B:59 , THR B:68 , GLU B:69 , PHE B:81 , MET B:85 , PHE B:88 , SER B:117 , CYS B:118 , CYS B:121 , LYS B:126 , NO B:1130 , GOL B:1131 , HOH B:2131BINDING SITE FOR RESIDUE HEC B1129
04AC4SOFTWAREHIS B:122 , LYS B:126 , HEC B:1129 , GOL B:1131BINDING SITE FOR RESIDUE NO B1130
05AC5SOFTWARELYS A:31 , LYS A:33 , HOH A:2055 , HOH A:2101 , HOH A:2169BINDING SITE FOR RESIDUE SO4 A1131
06AC6SOFTWAREILE A:60 , ALA A:61 , SER A:101 , SER A:102 , GOL A:1134 , HOH A:2095 , HOH A:2171BINDING SITE FOR RESIDUE SO4 A1132
07AC7SOFTWAREPHE A:36 , ASP A:37 , ALA A:38 , GLU A:57 , HOH A:2090 , HOH A:2091 , HOH A:2172BINDING SITE FOR RESIDUE GOL A1133
08AC8SOFTWARELYS B:126 , HEC B:1129 , NO B:1130 , HOH B:2132BINDING SITE FOR RESIDUE GOL B1131
09AC9SOFTWAREHIS A:56 , GLU A:57 , PHE A:59 , ILE A:60 , LYS A:78 , LYS A:100 , SER A:102 , SO4 A:1132 , HOH A:2092 , HOH A:2093 , HOH A:2136BINDING SITE FOR RESIDUE GOL A1134
10BC1SOFTWARETHR A:43 , SER A:83 , THR A:86 , ALA A:87 , ASP A:90 , GOL A:1135 , HOH A:2075 , HOH A:2126 , LYS B:53 , GLN B:89BINDING SITE FOR RESIDUE GOL B1132
11BC2SOFTWAREALA A:87 , ASP A:90 , HOH A:2130 , HIS B:56 , ASP B:82 , MET B:85 , THR B:86 , GLN B:89 , GOL B:1132BINDING SITE FOR RESIDUE GOL A1135

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CX9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CX9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CX9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CX9)

(-) Exons   (0, 0)

(no "Exon" information available for 4CX9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cx9 A   1 NFEEPADAIEYRQAAFGLIAYNFGDMGAMLKGKKPFDAAVFSTRADNVAALSKIPHEGFIAGSDKGDTEALAKIWQDKADFDSKMTAFQDNAAALAVAAKSSDQNNIKQAFANTGKSCKGCHDVYKKD 128
                                    10        20        30        40        50        60        70        80        90       100       110       120        


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cx9 B   1 NFEEPADAIEYRQAAFGLIAYNFGDMGAMLKGKKPFDAAVFSTRADNVAALSKIPHEGFIAGSDKGDTEALAKIWQDKADFDSKMTAFQDNAAALAVAAKSSDQNNIKQAFANTGKSCKGCHDVYKKD 128
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CX9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CX9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CX9)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  4cx9
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 Related Entries

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        Q07Z15_SHEFN | Q07Z15: 4ulv

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