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(-) Description

Title :  CYTOCHROME C PRIME FROM SHEWANELLA FRIGIDIMARINA
 
Authors :  A. A. Manole, D. Kekilli, P. S. Dobbin, M. A. Hough
Date :  14 May 14  (Deposition) - 08 Apr 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.29
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Electron Transport, Gas Sensor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Manole, D. Kekilli, D. A. Svistunenko, M. T. Wilson, P. S. Dobbin, M. A. Hough
Conformational Control Of The Binding Of Diatomic Gases To Cytochrome C'.
J. Biol. Inorg. Chem. V. 20 675 2015
PubMed-ID: 25792378  |  Reference-DOI: 10.1007/S00775-015-1253-7

(-) Compounds

Molecule 1 - CYTOCHROME C, CLASS II
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMMB503EH
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: SHEWANELLA FRIGIDIMARINA
    Organism Taxid: 56812
    Synonym: CYTOCHROME C PRIME

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2HEC2Ligand/IonHEME C
3SO42Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:12 , GLN A:13 , PHE A:16 , ALA A:20 , PHE A:59 , THR A:68 , GLU A:69 , MET A:85 , PHE A:88 , SER A:117 , CYS A:118 , CYS A:121 , HIS A:122 , LYS A:126 , HOH A:2025 , HOH A:2144 , HOH A:2145BINDING SITE FOR RESIDUE HEC A 129
2AC2SOFTWAREHIS A:56 , GLU A:57 , PHE A:59 , ILE A:60 , LYS A:78 , LYS A:100 , SER A:101 , SER A:102 , SO4 A:133 , HOH A:2075 , HOH A:2092 , HOH A:2115BINDING SITE FOR RESIDUE GOL A 130
3AC3SOFTWARETHR A:43 , SER A:83 , THR A:86 , ALA A:87 , HOH A:2058 , HOH A:2106 , LYS B:53 , GLN B:89BINDING SITE FOR RESIDUE GOL A 131
4AC4SOFTWARELYS A:31 , LYS A:33 , ASP A:67 , HOH A:2043 , HOH A:2082BINDING SITE FOR RESIDUE SO4 A 132
5AC5SOFTWAREILE A:60 , ALA A:61 , SER A:101 , SER A:102 , GOL A:130 , HOH A:2078 , HOH A:2149BINDING SITE FOR RESIDUE SO4 A 133
6AC6SOFTWAREARG B:12 , GLN B:13 , PHE B:16 , ALA B:20 , PHE B:59 , THR B:68 , GLU B:69 , PHE B:81 , MET B:85 , PHE B:88 , SER B:117 , CYS B:118 , CYS B:121 , HIS B:122 , LYS B:126 , HOH B:2020 , HOH B:2146BINDING SITE FOR RESIDUE HEC B 129
7AC7SOFTWAREPHE A:36 , ASP A:37 , ALA A:38 , GLU A:57 , HOH A:2073 , HOH A:2074 , THR B:43 , HOH B:2147BINDING SITE FOR RESIDUE GOL B 130

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ULV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ULV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ULV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ULV)

(-) Exons   (0, 0)

(no "Exon" information available for 4ULV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ulv A   1 NFEEPADAIEYRQAAFGLIAYNFGDMGAMLKGKKPFDAAVFSTRADNVAALSKIPHEGFIAGSDKGDTEALAKIWQDKADFDSKMTAFQDNAAALAVAAKSSDQNNIKQAFANTGKSCKGCHDVYKKD 128
                                    10        20        30        40        50        60        70        80        90       100       110       120        


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ulv B   1 NFEEPADAIEYRQAAFGLIAYNFGDMGAMLKGKKPFDAAVFSTRADNVAALSKIPHEGFIAGSDKGDTEALAKIWQDKADFDSKMTAFQDNAAALAVAAKSSDQNNIKQAFANTGKSCKGCHDVYKKD 128
                                    10        20        30        40        50        60        70        80        90       100       110       120
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ULV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ULV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ULV)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q07Z15_SHEFN | Q07Z15: 4cx9

(-) Related Entries Specified in the PDB File

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