Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  METHYLMERCURY CHLORIDE DERIVATIVE STRUCTURE OF THE LYTIC CHAPK DOMAIN OF THE ENDOLYSIN LYSK FROM STAPHYLOCOCCUS AUREUS BACTERIOPHAGE K
 
Authors :  M. Sanz-Gaitero, R. Keary, C. Garcia-Doval, A. Coffey, M. J. Van Raaij
Date :  12 Mar 14  (Deposition) - 06 Aug 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Viral Protein, Peptidoglycan, Protease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sanz-Gaitero, R. Keary, C. Garcia-Doval, A. Coffey, M. J. Van Raai
Crystal Structure Of The Lytic Chapk Domain Of The Endolysin Lysk From Staphylococcus Aureus Bacteriophage K.
Virol. J. V. 11 133 2014
PubMed-ID: 25064136  |  Reference-DOI: 10.1186/1743-422X-11-133
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ORF30/ORF32
    Atcc: 19685-B1
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE60
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CHAPK, RESIDUES 1-165
    Organism Scientific: STAPHYLOCOCCUS PHAGE K
    Organism Taxid: 221915
    Synonym: LYSK

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 30)

Asymmetric Unit (7, 30)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2CL2Ligand/IonCHLORIDE ION
3CMH4Ligand/IonS-(METHYLMERCURY)-L-CYSTEINE
4EPE4Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
5GOL2Ligand/IonGLYCEROL
6HG6Ligand/IonMERCURY (II) ION
7MMC8Ligand/IonMETHYL MERCURY ION
Biological Unit 1 (4, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3CMH1Ligand/IonS-(METHYLMERCURY)-L-CYSTEINE
4EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
5GOL1Ligand/IonGLYCEROL
6HG-1Ligand/IonMERCURY (II) ION
7MMC2Ligand/IonMETHYL MERCURY ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3CMH1Ligand/IonS-(METHYLMERCURY)-L-CYSTEINE
4EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
5GOL-1Ligand/IonGLYCEROL
6HG-1Ligand/IonMERCURY (II) ION
7MMC2Ligand/IonMETHYL MERCURY ION
Biological Unit 3 (3, 4)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3CMH1Ligand/IonS-(METHYLMERCURY)-L-CYSTEINE
4EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
5GOL-1Ligand/IonGLYCEROL
6HG-1Ligand/IonMERCURY (II) ION
7MMC2Ligand/IonMETHYL MERCURY ION
Biological Unit 4 (4, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3CMH1Ligand/IonS-(METHYLMERCURY)-L-CYSTEINE
4EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
5GOL1Ligand/IonGLYCEROL
6HG-1Ligand/IonMERCURY (II) ION
7MMC2Ligand/IonMETHYL MERCURY ION

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:53 , GLN A:55 , ASP A:56 , LEU A:57 , GLY A:116 , HIS A:117 , ILE A:118 , GLN A:135 , CL A:1167 , EPE A:1169 , HOH A:2094 , HOH A:2172BINDING SITE FOR RESIDUE CMH A1166
02AC2SOFTWAREHIS A:117 , CMH A:1166BINDING SITE FOR RESIDUE CL A1167
03AC3SOFTWAREARG A:11 , SER A:22 , PRO A:23 , ASP A:60 , TRP A:64 , ASN A:68 , MMC A:1171BINDING SITE FOR RESIDUE GOL A1168
04AC4SOFTWAREPHE A:36 , TYR A:50 , GLN A:53 , GLN A:55 , ASN A:75 , ALA A:76 , TRP A:115 , CMH A:1166 , HOH A:2097 , HOH A:2113 , HOH A:2114BINDING SITE FOR RESIDUE EPE A1169
05AC5SOFTWAREASP A:45 , ASP A:47 , TYR A:49 , HIS A:51 , ASP A:56 , HOH A:2083BINDING SITE FOR RESIDUE CA A1170
06AC6SOFTWARELYS A:3 , TRP A:64 , ASP A:67 , ASN A:68 , GOL A:1168BINDING SITE FOR RESIDUE MMC A1171
07AC7SOFTWAREILE A:90 , HIS A:91 , HOH A:2143BINDING SITE FOR RESIDUE MMC A1172
08AC8SOFTWAREALA A:2BINDING SITE FOR RESIDUE HG A1173
09AC9SOFTWAREGLY A:110 , SER A:111BINDING SITE FOR RESIDUE HG A1174
10BC1SOFTWAREGLN B:53 , GLN B:55 , ASP B:56 , LEU B:57 , GLY B:116 , HIS B:117 , ILE B:118 , GLN B:135 , CL B:1167 , EPE B:1168 , HOH B:2097 , HOH B:2163BINDING SITE FOR RESIDUE CMH B1166
11BC2SOFTWAREGLY B:116 , HIS B:117 , CMH B:1166 , HOH B:2097BINDING SITE FOR RESIDUE CL B1167
12BC3SOFTWAREPHE B:36 , TYR B:50 , GLN B:53 , GLN B:55 , ASN B:75 , ALA B:76 , TRP B:115 , CMH B:1166 , HOH B:2073 , HOH B:2089 , HOH B:2115BINDING SITE FOR RESIDUE EPE B1168
13BC4SOFTWAREASP B:45 , ASP B:47 , TYR B:49 , HIS B:51 , ASP B:56 , HOH B:2088BINDING SITE FOR RESIDUE CA B1169
14BC5SOFTWAREILE B:90 , HIS B:91BINDING SITE FOR RESIDUE MMC B1170
15BC6SOFTWARELYS B:3 , TRP B:64 , ASP B:67 , ASN B:68BINDING SITE FOR RESIDUE MMC B1171
16BC7SOFTWAREALA B:2BINDING SITE FOR RESIDUE HG B1172
17BC8SOFTWAREGLY B:110 , SER B:111BINDING SITE FOR RESIDUE HG B1173
18BC9SOFTWAREGLN C:53 , GLN C:55 , ASP C:56 , LEU C:57 , GLY C:116 , HIS C:117 , ILE C:118 , GLN C:135 , EPE C:1167 , HOH C:2081 , HOH C:2142BINDING SITE FOR RESIDUE CMH C1166
19CC1SOFTWARETYR C:50 , GLN C:53 , GLN C:55 , ASN C:75 , ALA C:76 , TRP C:115 , CMH C:1166 , HOH C:2082 , HOH C:2085 , HOH C:2104BINDING SITE FOR RESIDUE EPE C1167
20CC2SOFTWAREASP C:45 , ASP C:47 , TYR C:49 , HIS C:51 , ASP C:56 , HOH C:2073BINDING SITE FOR RESIDUE CA C1168
21CC3SOFTWAREILE C:90 , HIS C:91BINDING SITE FOR RESIDUE MMC C1169
22CC4SOFTWARELYS C:3 , TRP C:64 , ASP C:67 , HOH C:2015BINDING SITE FOR RESIDUE MMC C1170
23CC5SOFTWAREHIS C:117 , HOH C:2156BINDING SITE FOR RESIDUE HG C1171
24CC6SOFTWAREGLN D:53 , GLN D:55 , ASP D:56 , LEU D:57 , GLY D:116 , HIS D:117 , ILE D:118 , GLN D:135 , EPE D:1168 , HOH D:2077 , HOH D:2132BINDING SITE FOR RESIDUE CMH D1166
25CC7SOFTWARELYS A:81 , HOH A:2120 , ARG D:71 , THR D:72 , TRP D:73BINDING SITE FOR RESIDUE GOL D1167
26CC8SOFTWARETYR D:50 , GLN D:53 , GLN D:55 , ASN D:75 , ALA D:76 , TRP D:115 , CMH D:1166 , HOH D:2096 , HOH D:2177 , HOH D:2178BINDING SITE FOR RESIDUE EPE D1168
27CC9SOFTWAREASP D:45 , ASP D:47 , TYR D:49 , HIS D:51 , ASP D:56 , HOH D:2068BINDING SITE FOR RESIDUE CA D1169
28DC1SOFTWAREILE D:90 , HIS D:91 , HOH D:2116BINDING SITE FOR RESIDUE MMC D1170
29DC2SOFTWARELYS D:3 , TRP D:64 , ASP D:67 , ASN D:68BINDING SITE FOR RESIDUE MMC D1171
30DC3SOFTWAREHIS D:117BINDING SITE FOR RESIDUE HG D1172

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CT3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CT3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CT3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CT3)

(-) Exons   (0, 0)

(no "Exon" information available for 4CT3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:163
 aligned with Q6Y7T6_BPPGK | Q6Y7T6 from UniProtKB/TrEMBL  Length:495

    Alignment length:164
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    
         Q6Y7T6_BPPGK     2 AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQCQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhh...................................-hhhhhhhhhhhh........hhhhhhhh......eeee...........eeee.hhhhh...eeeeeee......eeeee...........eeeee....eeeeee..ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ct3 A   2 AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQ-QDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA 165
                                    11        21        31        41        51 | |    61        71        81        91       101       111       121       131       141       151       161    
                                                                              53 |                                                                                                              
                                                                                55                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:163
 aligned with Q6Y7T6_BPPGK | Q6Y7T6 from UniProtKB/TrEMBL  Length:495

    Alignment length:164
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    
         Q6Y7T6_BPPGK     2 AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQCQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhh...................................-hhhhhhhhhhhh........hhhhhhhh......eeee...........eeee.hhhhh...eeeeeee......eeeee...........eeeee....eeeeee..ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ct3 B   2 AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQ-QDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA 165
                                    11        21        31        41        51 | |    61        71        81        91       101       111       121       131       141       151       161    
                                                                              53 |                                                                                                              
                                                                                55                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:163
 aligned with Q6Y7T6_BPPGK | Q6Y7T6 from UniProtKB/TrEMBL  Length:495

    Alignment length:164
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    
         Q6Y7T6_BPPGK     2 AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQCQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhh....................................-hhhhhhhhhhhh........hhhhhhhh......eeee...........eeee.hhhhh...eeeeeee......eeeee...........eeeee....eeeeee..ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ct3 C   2 AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQ-QDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA 165
                                    11        21        31        41        51 | |    61        71        81        91       101       111       121       131       141       151       161    
                                                                              53 |                                                                                                              
                                                                                55                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:163
 aligned with Q6Y7T6_BPPGK | Q6Y7T6 from UniProtKB/TrEMBL  Length:495

    Alignment length:164
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    
         Q6Y7T6_BPPGK     2 AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQCQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA 165
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhh....................................-hhhhhhhhhhhh........hhhhhhhh......eeee...........eeee.hhhhh...eeeeeee......eeeee...........eeeee....eeeeee..ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ct3 D   2 AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQ-QDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA 165
                                    11        21        31        41        51 | |    61        71        81        91       101       111       121       131       141       151       161    
                                                                              53 |                                                                                                              
                                                                                55
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CT3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CT3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CT3)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q6Y7T6_BPPGK | Q6Y7T6)
molecular function
    GO:0008745    N-acetylmuramoyl-L-alanine amidase activity    Catalysis of the hydrolysis of the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell-wall glycopeptides.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0051715    cytolysis in other organism    The killing by an organism of a cell in another organism by means of the rupture of cell membranes and the loss of cytoplasm.
    GO:0009253    peptidoglycan catabolic process    The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CMH  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EPE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    HG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MMC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4ct3)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4ct3
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q6Y7T6_BPPGK | Q6Y7T6
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q6Y7T6_BPPGK | Q6Y7T6
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6Y7T6_BPPGK | Q6Y7T6: 4csh

(-) Related Entries Specified in the PDB File

4csh NATIVE STRUCTURE OF THE LYTIC CHAPK DOMAIN OF THE ENDOLYSIN LYSK FROM STAPHYLOCOCCUS AUREUS BACTERIOPHAGE K