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4CT3
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (35 KB)
Biol.Unit 4 (35 KB)
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Title
:
METHYLMERCURY CHLORIDE DERIVATIVE STRUCTURE OF THE LYTIC CHAPK DOMAIN OF THE ENDOLYSIN LYSK FROM STAPHYLOCOCCUS AUREUS BACTERIOPHAGE K
Authors
:
M. Sanz-Gaitero, R. Keary, C. Garcia-Doval, A. Coffey, M. J. Van Raaij
Date
:
12 Mar 14 (Deposition) - 06 Aug 14 (Release) - 06 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Viral Protein, Peptidoglycan, Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sanz-Gaitero, R. Keary, C. Garcia-Doval, A. Coffey, M. J. Van Raai
Crystal Structure Of The Lytic Chapk Domain Of The Endolysin Lysk From Staphylococcus Aureus Bacteriophage K.
Virol. J. V. 11 133 2014
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(7, 30)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: S-(METHYLMERCURY)-L-CYSTEINE (CMHa)
3b: S-(METHYLMERCURY)-L-CYSTEINE (CMHb)
3c: S-(METHYLMERCURY)-L-CYSTEINE (CMHc)
3d: S-(METHYLMERCURY)-L-CYSTEINE (CMHd)
4a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
4b: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEb)
4c: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEc)
4d: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEd)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
6a: MERCURY (II) ION (HGa)
6b: MERCURY (II) ION (HGb)
6c: MERCURY (II) ION (HGc)
6d: MERCURY (II) ION (HGd)
6e: MERCURY (II) ION (HGe)
6f: MERCURY (II) ION (HGf)
7a: METHYL MERCURY ION (MMCa)
7b: METHYL MERCURY ION (MMCb)
7c: METHYL MERCURY ION (MMCc)
7d: METHYL MERCURY ION (MMCd)
7e: METHYL MERCURY ION (MMCe)
7f: METHYL MERCURY ION (MMCf)
7g: METHYL MERCURY ION (MMCg)
7h: METHYL MERCURY ION (MMCh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
CMH
4
Ligand/Ion
S-(METHYLMERCURY)-L-CYSTEINE
4
EPE
4
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
5
GOL
2
Ligand/Ion
GLYCEROL
6
HG
6
Ligand/Ion
MERCURY (II) ION
7
MMC
8
Ligand/Ion
METHYL MERCURY ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:53 , GLN A:55 , ASP A:56 , LEU A:57 , GLY A:116 , HIS A:117 , ILE A:118 , GLN A:135 , CL A:1167 , EPE A:1169 , HOH A:2094 , HOH A:2172
BINDING SITE FOR RESIDUE CMH A1166
02
AC2
SOFTWARE
HIS A:117 , CMH A:1166
BINDING SITE FOR RESIDUE CL A1167
03
AC3
SOFTWARE
ARG A:11 , SER A:22 , PRO A:23 , ASP A:60 , TRP A:64 , ASN A:68 , MMC A:1171
BINDING SITE FOR RESIDUE GOL A1168
04
AC4
SOFTWARE
PHE A:36 , TYR A:50 , GLN A:53 , GLN A:55 , ASN A:75 , ALA A:76 , TRP A:115 , CMH A:1166 , HOH A:2097 , HOH A:2113 , HOH A:2114
BINDING SITE FOR RESIDUE EPE A1169
05
AC5
SOFTWARE
ASP A:45 , ASP A:47 , TYR A:49 , HIS A:51 , ASP A:56 , HOH A:2083
BINDING SITE FOR RESIDUE CA A1170
06
AC6
SOFTWARE
LYS A:3 , TRP A:64 , ASP A:67 , ASN A:68 , GOL A:1168
BINDING SITE FOR RESIDUE MMC A1171
07
AC7
SOFTWARE
ILE A:90 , HIS A:91 , HOH A:2143
BINDING SITE FOR RESIDUE MMC A1172
08
AC8
SOFTWARE
ALA A:2
BINDING SITE FOR RESIDUE HG A1173
09
AC9
SOFTWARE
GLY A:110 , SER A:111
BINDING SITE FOR RESIDUE HG A1174
10
BC1
SOFTWARE
GLN B:53 , GLN B:55 , ASP B:56 , LEU B:57 , GLY B:116 , HIS B:117 , ILE B:118 , GLN B:135 , CL B:1167 , EPE B:1168 , HOH B:2097 , HOH B:2163
BINDING SITE FOR RESIDUE CMH B1166
11
BC2
SOFTWARE
GLY B:116 , HIS B:117 , CMH B:1166 , HOH B:2097
BINDING SITE FOR RESIDUE CL B1167
12
BC3
SOFTWARE
PHE B:36 , TYR B:50 , GLN B:53 , GLN B:55 , ASN B:75 , ALA B:76 , TRP B:115 , CMH B:1166 , HOH B:2073 , HOH B:2089 , HOH B:2115
BINDING SITE FOR RESIDUE EPE B1168
13
BC4
SOFTWARE
ASP B:45 , ASP B:47 , TYR B:49 , HIS B:51 , ASP B:56 , HOH B:2088
BINDING SITE FOR RESIDUE CA B1169
14
BC5
SOFTWARE
ILE B:90 , HIS B:91
BINDING SITE FOR RESIDUE MMC B1170
15
BC6
SOFTWARE
LYS B:3 , TRP B:64 , ASP B:67 , ASN B:68
BINDING SITE FOR RESIDUE MMC B1171
16
BC7
SOFTWARE
ALA B:2
BINDING SITE FOR RESIDUE HG B1172
17
BC8
SOFTWARE
GLY B:110 , SER B:111
BINDING SITE FOR RESIDUE HG B1173
18
BC9
SOFTWARE
GLN C:53 , GLN C:55 , ASP C:56 , LEU C:57 , GLY C:116 , HIS C:117 , ILE C:118 , GLN C:135 , EPE C:1167 , HOH C:2081 , HOH C:2142
BINDING SITE FOR RESIDUE CMH C1166
19
CC1
SOFTWARE
TYR C:50 , GLN C:53 , GLN C:55 , ASN C:75 , ALA C:76 , TRP C:115 , CMH C:1166 , HOH C:2082 , HOH C:2085 , HOH C:2104
BINDING SITE FOR RESIDUE EPE C1167
20
CC2
SOFTWARE
ASP C:45 , ASP C:47 , TYR C:49 , HIS C:51 , ASP C:56 , HOH C:2073
BINDING SITE FOR RESIDUE CA C1168
21
CC3
SOFTWARE
ILE C:90 , HIS C:91
BINDING SITE FOR RESIDUE MMC C1169
22
CC4
SOFTWARE
LYS C:3 , TRP C:64 , ASP C:67 , HOH C:2015
BINDING SITE FOR RESIDUE MMC C1170
23
CC5
SOFTWARE
HIS C:117 , HOH C:2156
BINDING SITE FOR RESIDUE HG C1171
24
CC6
SOFTWARE
GLN D:53 , GLN D:55 , ASP D:56 , LEU D:57 , GLY D:116 , HIS D:117 , ILE D:118 , GLN D:135 , EPE D:1168 , HOH D:2077 , HOH D:2132
BINDING SITE FOR RESIDUE CMH D1166
25
CC7
SOFTWARE
LYS A:81 , HOH A:2120 , ARG D:71 , THR D:72 , TRP D:73
BINDING SITE FOR RESIDUE GOL D1167
26
CC8
SOFTWARE
TYR D:50 , GLN D:53 , GLN D:55 , ASN D:75 , ALA D:76 , TRP D:115 , CMH D:1166 , HOH D:2096 , HOH D:2177 , HOH D:2178
BINDING SITE FOR RESIDUE EPE D1168
27
CC9
SOFTWARE
ASP D:45 , ASP D:47 , TYR D:49 , HIS D:51 , ASP D:56 , HOH D:2068
BINDING SITE FOR RESIDUE CA D1169
28
DC1
SOFTWARE
ILE D:90 , HIS D:91 , HOH D:2116
BINDING SITE FOR RESIDUE MMC D1170
29
DC2
SOFTWARE
LYS D:3 , TRP D:64 , ASP D:67 , ASN D:68
BINDING SITE FOR RESIDUE MMC D1171
30
DC3
SOFTWARE
HIS D:117
BINDING SITE FOR RESIDUE HG D1172
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Sorry, no Info available
[
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Asym.Unit (134 KB)
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