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Title :   CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 TETRAMER BOUND TO A DNA 4-MER

Authors :   C. Leyrat, M. Renner, K. Harlos, J. M. Grimes

Date :   05 Mar 14 (Deposition) - 28 May 14 (Release) - 25 Jun 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.28

Chains :   Asym./Biol. Unit : A,B,C,E,G

Keywords :   Viral Protein-Dna Complex, Antiterminator, Transcription Elongation, Rna-Binding, Modular Protein, Asymmetric Tetramer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Leyrat, M. Renner, K. Harlos, J. T. Huiskonen, J. M. Grimes
Drastic Changes In Conformational Dynamics Of The Antiterminator M2-1 Regulate Transcription Efficiency In Pneumovirinae.
Elife V. 3 02674 2014
PubMed-ID: 24842877 | Reference-DOI: 10.7554/ELIFE.02674

Molecule 1 - M2-1
	Chains	:	A, B, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	POPINF
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	ROSETTA2
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	HUMAN METAPNEUMOVIRUS
	Organism Taxid	:	162145
	Strain	:	NL1-00 (A1)

Molecule 2 - M2-1
	Chains	:	C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	POPINF
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	ROSETTA2
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	HUMAN METAPNEUMOVIRUS
	Organism Taxid	:	162145
	Strain	:	NL1-00 (A1)

*Molecule 3 - 5'-D(APGPTPTPAP)-3'**
	Chains	:	G
	Organism Scientific	:	HUMAN METAPNEUMOVIRUS
	Organism Taxid	:	162145
	Synthetic	:	YES

		1	2	3	4	5
Asymmetric/Biological Unit	:	A	B	C	E	G

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 5)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	ZN	4	Ligand/Ion	ZINC ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS E:7 , CYS E:15 , CYS E:21 , HIS E:25	BINDING SITE FOR RESIDUE ZN E1177
2	AC2	SOFTWARE	CYS A:7 , CYS A:15 , CYS A:21 , HIS A:25	BINDING SITE FOR RESIDUE ZN A1171
3	AC3	SOFTWARE	CYS B:7 , CYS B:15 , CYS B:21 , HIS B:25	BINDING SITE FOR RESIDUE ZN B1168
4	AC4	SOFTWARE	CYS C:7 , CYS C:15 , CYS C:21 , HIS C:25	BINDING SITE FOR RESIDUE ZN C1174
5	AC5	SOFTWARE	ARG B:33 , TRP C:30 , PRO C:31 , ASP C:32 , HOH C:2076	BINDING SITE FOR RESIDUE GOL C1175

(no "SS Bond" information available for 4CSA)

(no "Cis Peptide Bond" information available for 4CSA)

(no "SAP(SNP)/Variant" information available for 4CSA)

(no "PROSITE Motif" information available for 4CSA)

(no "Exon" information available for 4CSA)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:161
 aligned with Q8QN58_9MONO | Q8QN58 from UniProtKB/TrEMBL  Length:187

    Alignment length:168
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162        
         Q8QN58_9MONO     3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRADGLSIISGAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAE 170
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhh..-------...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4csa A   3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRA-------GAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAE 170
                                    12        22        32        42        52|       62        72        82        92       102       112       122       132       142       152       162        
                                                                             53      61

Chain B from PDB  Type:PROTEIN  Length:159
 aligned with Q8QN58_9MONO | Q8QN58 from UniProtKB/TrEMBL  Length:187

    Alignment length:165
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     
         Q8QN58_9MONO     3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRADGLSIISGAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSA 167
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh....hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh....------..hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4csa B   3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRAD------GAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSA 167
                                    12        22        32        42        52 |      62        72        82        92       102       112       122       132       142       152       162     
                                                                              54     61

Chain C from PDB  Type:PROTEIN  Length:164
 aligned with Q8QN58_9MONO | Q8QN58 from UniProtKB/TrEMBL  Length:187

    Alignment length:172
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171  
         Q8QN58_9MONO     2 SRKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRADGLSIISGAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAENDS 173
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh...hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..--------.hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4csa C   2 SRKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRDTDRA--------AGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAENDS 173
                                    11        21        31        41        51 |       -|       71        81        91       101       111       121       131       141       151       161       171  
                                                                              53       62

Chain E from PDB  Type:PROTEIN  Length:163
 aligned with Q8QN58_9MONO | Q8QN58 from UniProtKB/TrEMBL  Length:187

    Alignment length:174
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172    
         Q8QN58_9MONO     3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRADGLSIISGAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAENDSSYA 176
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhh....hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..-----------hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4csa E   3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDR-----------REDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAENDSSYA 176
                                    12        22        32        42        52         - |      72        82        92       102       112       122       132       142       152       162       172    
                                                                            52          64

Chain G from PDB  Type:DNA  Length:4
                                    
                 4csa G   1 AGTT   4

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4CSA)

(no "CATH Domain" information available for 4CSA)

(no "Pfam Domain" information available for 4CSA)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,E (Q8QN58_9MONO | Q8QN58)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
	GO:0003746	translation elongation factor activity	Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
	GO:0046782	regulation of viral transcription	Any process that modulates the frequency, rate or extent of the transcription of the viral genome.
	GO:0006414	translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
	GO:0019012	virion	The complete fully infectious extracellular virus particle.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4csa)

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	4csa
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UniProtKB/TrEMBL
	Q8QN58_9MONO \| Q8QN58	:	4cs7 4cs8 4cs9

4cs7	CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 TETRAMER, FORM 1
4cs8	CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 TETRAMER, FORM 2
4cs9	CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 TETRAMER BOUND TO ADENOSINE MONOPHOSPHATE

Description

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Ligands, Modified Residues, Ions (2, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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