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Title :   CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 TETRAMER BOUND TO ADENOSINE MONOPHOSPHATE

Authors :   C. Leyrat, M. Renner, K. Harlos, J. M. Grimes

Date :   05 Mar 14 (Deposition) - 28 May 14 (Release) - 25 Jun 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.01

Chains :   Asym. Unit : A,B,C,E
Biol. Unit 1: A,B,C,E  (1x)

Keywords :   Viral Protein, Antiterminator, Transcription Elongation, Rna-Binding, Modular Protein, Asymmetric Tetramer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Leyrat, M. Renner, K. Harlos, J. T. Huiskonen, J. M. Grimes
Drastic Changes In Conformational Dynamics Of The Antiterminator M2-1 Regulate Transcription Efficiency In Pneumovirinae.
Elife V. 3 02674 2014
PubMed-ID: 24842877 | Reference-DOI: 10.7554/ELIFE.02674

Molecule 1 - M2-1
	Chains	:	A, B, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	POPINF
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	ROSETTA2
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	HUMAN METAPNEUMOVIRUS
	Organism Taxid	:	162145
	Strain	:	NL1-00 (A1)

Molecule 2 - M2-1
	Chains	:	C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	POPINF
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	ROSETTA2
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	HUMAN METAPNEUMOVIRUS
	Organism Taxid	:	162145
	Strain	:	NL1-00 (A1)

		1	2	3	4
Asymmetric Unit	:	A	B	C	E
Biological Unit 1 (1x)	:	A	B	C	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	AMP	4	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	AMP	4	Ligand/Ion	ADENOSINE MONOPHOSPHATE
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS E:7 , CYS E:15 , CYS E:21 , HIS E:25	BINDING SITE FOR RESIDUE ZN E1178
2	AC2	SOFTWARE	CYS A:7 , CYS A:15 , CYS A:21 , HIS A:25	BINDING SITE FOR RESIDUE ZN A1171
3	AC3	SOFTWARE	CYS B:7 , CYS B:15 , CYS B:21 , HIS B:25	BINDING SITE FOR RESIDUE ZN B1170
4	AC4	SOFTWARE	CYS C:7 , CYS C:15 , CYS C:21 , HIS C:25	BINDING SITE FOR RESIDUE ZN C1173
5	AC5	SOFTWARE	CYS C:7 , LYS C:8 , TYR C:9 , PHE C:23 , HOH C:2019 , HOH C:2132 , HOH C:2133 , HOH C:2134 , HOH C:2135	BINDING SITE FOR RESIDUE AMP C1174
6	AC6	SOFTWARE	PRO B:6 , CYS B:7 , LYS B:8 , ARG B:17 , PHE B:23 , ASN B:145 , ARG B:149 , HOH B:2143 , ASP E:172 , TYR E:175	BINDING SITE FOR RESIDUE AMP B1171
7	AC7	SOFTWARE	PRO A:6 , CYS A:7 , LYS A:8 , TYR A:9 , PHE A:23 , HOH A:2082	BINDING SITE FOR RESIDUE AMP A1172
8	AC8	SOFTWARE	TYR C:9 , LYS C:14 , CYS C:15 , ASN C:16 , ARG C:17	BINDING SITE FOR RESIDUE AMP C1175

(no "SS Bond" information available for 4CS9)

(no "Cis Peptide Bond" information available for 4CS9)

(no "SAP(SNP)/Variant" information available for 4CS9)

(no "PROSITE Motif" information available for 4CS9)

(no "Exon" information available for 4CS9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:158
 aligned with Q8QN58_9MONO | Q8QN58 from UniProtKB/TrEMBL  Length:187

    Alignment length:168
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162        
         Q8QN58_9MONO     3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRADGLSIISGAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAE 170
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhh.----------hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cs9 A   3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDR----------GREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAE 170
                                    12        22        32        42        52         -|       72        82        92       102       112       122       132       142       152       162        
                                                                            52         63

Chain B from PDB  Type:PROTEIN  Length:164
 aligned with Q8QN58_9MONO | Q8QN58 from UniProtKB/TrEMBL  Length:187

    Alignment length:167
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       
         Q8QN58_9MONO     3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRADGLSIISGAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGA 169
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh....hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..---......hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cs9 B   3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRA---SIISGAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGA 169
                                    12        22        32        42        52|   |   62        72        82        92       102       112       122       132       142       152       162       
                                                                             53  57

Chain C from PDB  Type:PROTEIN  Length:165
 aligned with Q8QN58_9MONO | Q8QN58 from UniProtKB/TrEMBL  Length:187

    Alignment length:171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171 
         Q8QN58_9MONO     2 SRKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRADGLSIISGAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAEND 172
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh....hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...------...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cs9 C   2 SRKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRDTDRAD------GAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAEND 172
                                    11        21        31        41        51  |     61        71        81        91       101       111       121       131       141       151       161       171 
                                                                               54     61

Chain E from PDB  Type:PROTEIN  Length:164
 aligned with Q8QN58_9MONO | Q8QN58 from UniProtKB/TrEMBL  Length:187

    Alignment length:175
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172     
         Q8QN58_9MONO     3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDRADGLSIISGAGREDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAENDSSYAL 177
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh....hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh..-----------hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cs9 E   3 RKAPCKYEVRGKCNRGSECKFNHNYWSWPDRYLLIRSNYLLNQLLRNTDR-----------REDRTQDFVLGSTNVVQGYIDDNQSITKAAACYSLHNIIKQLQEVEVRQARDNKLSDSKHVALHNLVLSYMEMSKTPASLINNLKRLPREKLKKLAKLIIDLSAGAENDSSYAL 177
                                    12        22        32        42        52         - |      72        82        92       102       112       122       132       142       152       162       172     
                                                                            52          64

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4CS9)

(no "CATH Domain" information available for 4CS9)

(no "Pfam Domain" information available for 4CS9)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,E (Q8QN58_9MONO | Q8QN58)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
	GO:0003746	translation elongation factor activity	Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
	GO:0046782	regulation of viral transcription	Any process that modulates the frequency, rate or extent of the transcription of the viral genome.
	GO:0006414	translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
	GO:0019012	virion	The complete fully infectious extracellular virus particle.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4cs9)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	Q8QN58_9MONO \| Q8QN58	:	4cs7 4cs8 4csa

4cs7	CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 TETRAMER, FORM 1
4cs8	CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 TETRAMER, FORM 2
4csa	CRYSTAL STRUCTURE OF THE ASYMMETRIC HUMAN METAPNEUMOVIRUS M2-1 TETRAMER BOUND TO A DNA 4-MER

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (7, 7)

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