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(-) Description

Title :  CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 9 A DOMAIN (EPA9A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1-3GLCNAC
 
Authors :  M. Kock, M. Maestre-Reyna, R. Diderrich, H. -U. Moesch, L. -O. Essen
Date :  31 Jan 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Cell Adhesion, Lectin, Tissue Invasion, Pathogenicity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Diderrich, M. Kock, M. Maestre-Reyna, S. Rupp, L. -O. Essen, H. -U. Moesch
The Structure And Function Of The Epithelial Adhesins
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - EPITHELIAL ADHESIN 9
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI B
    Expression System Taxid: 37762
    Expression System Variant: SHUFFLE T7 EXPRESS (C3029)
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Fragment: ADHESION DOMAIN (A DOMAIN), RESIDUES 39-305
    Organism Scientific: CANDIDA GLABRATA
    Organism Taxid: 284593
    Strain: CBS 138

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CL1Ligand/IonCHLORIDE ION
3GAL1Ligand/IonBETA-D-GALACTOSE
4NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:196 , ASP A:197 , ASN A:256 , ASP A:258 , HIS A:260 , GAL A:1295BINDING SITE FOR RESIDUE CA A1294
2AC2SOFTWAREHIS A:64 , ASP A:66 , HOH A:2012 , HOH A:2013BINDING SITE FOR RESIDUE CA A1297
3AC3SOFTWAREGLU A:50 , GLY A:204 , SER A:205 , LYS A:206BINDING SITE FOR RESIDUE CL A1298
4AC4SOFTWARECYS A:109 , TRP A:110 , CYS A:151 , ASP A:196 , ASP A:197 , TRP A:230 , ARG A:257 , ASP A:258 , TYR A:259 , HIS A:260 , CA A:1294 , HOH A:2033 , HOH A:2034BINDING SITE FOR POLY-SACCHARIDE RESIDUES GAL A1295 THROUGH NAG A1296

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:52 -A:211
2A:109 -A:151
3A:212 -A:293

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:196 -Asp A:197
2Trp A:230 -Pro A:231

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CP1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CP1)

(-) Exons   (0, 0)

(no "Exon" information available for 4CP1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eee.eeeeeee..........hhhhhh.....hhhhh..eeeeeeee.....eee..........ee..hhhhh....ee...eeeeeeeee.....eeeeeeeeee.eeeeee.........hhhhhh.......eeee.....eeeeeeee.....eeeeeeeee....eeeeeeee..............eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cp1 A  45 HYPRPEGCSSPPNAVSVGLHMDLYNYPYLYVKQCWNPEYQDPNFPRYGYKKYGSFGSSDHVNGKISWDHNEFKEGCKPIMARLPTAYNYPAKITFSNFTMVLSGYFKPKSTGLYKFEIHADDFILFNFGSKNAFECCNREESIDNFGPYVAYAMWPNEADQELEVYLFEDSYYPIRLFYNNRDYHSKFMVGFYPPNTEEITYDFDGYLYMLDDTGNEC 293
                                    54        64        74 ||    115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285        
                                                          76|                                                                                                                                                                                         
                                                          108
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CP1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CP1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CP1)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B4UMX2_CANGA | B4UMX2: 4cp0 4cp2

(-) Related Entries Specified in the PDB File

4cou CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM CANDIDA GLABRATA IN COMPLEX WITH LACTOSE
4cov CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALA1- 3GAL
4cow CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM CANDIDA GLABRATA IN COMPLEX WITH THE T- ANTIGEN (GALB1-3GALNAC)
4coy CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1- 4GLCNAC
4coz CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 6 A DOMAIN ( EPA6A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1- 3GLCNAC
4cp0 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 9 A DOMAIN ( EPA9A) FROM CANDIDA GLABRATA IN COMPLEX WITH LACTOSE
4cp2 CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 9 A DOMAIN ( EPA9A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1- 4GLCNAC