4CN7 - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA-BINDING DOMAIN BOUND TO AN IDEALIZED DR1 RESPONSE ELEMENT

Authors :   A. G. Mcewen, P. Poussin-Courmontagne, J. Osz, N. Rochel

Date :   21 Jan 14 (Deposition) - 18 Feb 15 (Release) - 18 Feb 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.34

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: E,F,G,H  (1x)
Biol. Unit 2: A,B,C,D  (1x)

Keywords :   Transcription-Dna Complex, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Osz, A. G. Mcewen, P. Poussin-Courmontagne, E. Moutier, C. Birck, I. Davidson, D. Moras, N. Rochel
Structural Basis Of Natural Promoter Recognition By The Retinoid X Nuclear Receptor.
Sci. Rep. V. 5 8216 2015
PubMed-ID: 25645674 | Reference-DOI: 10.1038/SREP08216

Molecule 1 - RETINOIC ACID RECEPTOR RXR-ALPHA
	Chains	:	A, B, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHXGW
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	DNA-BINDING DOMAIN, RESIDUES 130-212
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1, RETINOID X RECEPTOR ALPHA

*Molecule 2 - 5'-D(CPTPAPGPGPTPCPAPAPAPGPGPTPCP APGP)-3'*
	Chains	:	C, G
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synthetic	:	YES

*Molecule 3 - 5'-D(CPTPGPAPCPCPTPTPTPGPAPCPCPTP APGP)-3'*
	Chains	:	D, H
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synthetic	:	YES

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:					E	F	G	H
Biological Unit 2 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 11)

No.	Name	Count	Type	Full Name
1	CL	3	Ligand/Ion	CHLORIDE ION
2	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:135 , CYS A:138 , CYS A:152 , CYS A:155	BINDING SITE FOR RESIDUE ZN A1205
02	AC2	SOFTWARE	CYS A:171 , CYS A:177 , CYS A:187 , CYS A:190	BINDING SITE FOR RESIDUE ZN A1206
03	AC3	SOFTWARE	CYS B:135 , CYS B:138 , CYS B:152 , CYS B:155	BINDING SITE FOR RESIDUE ZN B1211
04	AC4	SOFTWARE	CYS B:171 , CYS B:177 , CYS B:187 , CYS B:190	BINDING SITE FOR RESIDUE ZN B1212
05	AC5	SOFTWARE	CYS E:135 , CYS E:138 , CYS E:152 , CYS E:155	BINDING SITE FOR RESIDUE ZN E1208
06	AC6	SOFTWARE	CYS E:171 , CYS E:177 , CYS E:187 , CYS E:190	BINDING SITE FOR RESIDUE ZN E1209
07	AC7	SOFTWARE	CYS F:135 , CYS F:138 , CYS F:152 , CYS F:155	BINDING SITE FOR RESIDUE ZN F1211
08	AC8	SOFTWARE	CYS F:171 , CYS F:177 , CYS F:187 , CYS F:190	BINDING SITE FOR RESIDUE ZN F1212
09	AC9	SOFTWARE	ILE A:179 , LYS A:194	BINDING SITE FOR RESIDUE CL A1207
10	BC1	SOFTWARE	VAL A:149 , TYR A:150	BINDING SITE FOR RESIDUE CL A1208
11	BC2	SOFTWARE	TYR B:169	BINDING SITE FOR RESIDUE CL B1213

(no "SS Bond" information available for 4CN7)

(no "Cis Peptide Bond" information available for 4CN7)

(no "SAP(SNP)/Variant" information available for 4CN7)

(no "PROSITE Motif" information available for 4CN7)

(no "Exon" information available for 4CN7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:79
                                                                                                               
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...........ee..ee.hhhhhhhhhhhhhhh....................hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 4cn7 A 126 GSHMFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREA 204
                                   135       145       155       165       175       185       195

Chain B from PDB  Type:PROTEIN  Length:79
                                                                                                               
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......ee.eee..eeehhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 4cn7 B 132 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 210
                                   141       151       161       171       181       191       201

Chain C from PDB  Type:DNA  Length:16
                                                
                 4cn7 C   1 CTAGGTCAAAGGTCAG  16
                                    10

Chain D from PDB  Type:DNA  Length:16
                                                
                 4cn7 D   1 CTGACCTTTGACCTAG  16
                                    10

Chain E from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............ee..ee.hhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4cn7 E 131 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 207
                                   140       150       160       170       180       190       200

Chain F from PDB  Type:PROTEIN  Length:80
                                                                                                                
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............ee..ee.hhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh..hhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 4cn7 F 131 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 210
                                   140       150       160       170       180       190       200       210

Chain G from PDB  Type:DNA  Length:16
                                                
                 4cn7 G   1 CTAGGTCAAAGGTCAG  16
                                    10

Chain H from PDB  Type:DNA  Length:16
                                                
                 4cn7 H   1 CTGACCTTTGACCTAG  16
                                    10

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4CN7)

(no "CATH Domain" information available for 4CN7)

(no "Pfam Domain" information available for 4CN7)

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4cn2	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA -BINDING DOMAIN BOUND TO THE HUMAN RAMP2 RESPONSE ELEMENT
4cn3	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA -BINDING DOMAIN BOUND TO THE HUMAN GDE1SPA RESPONSE ELEMENT
4cn5	CRYSTAL STRUCTURE OF THE HUMAN RETINOID X RECEPTOR DNA -BINDING DOMAIN BOUND TO THE HUMAN NR1D1 RESPONSE ELEMENT

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Ligands, Modified Residues, Ions (2, 11)

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