4CIM - JenaLib

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:67 , PRO P:41 , ALA P:45	BINDING SITE FOR RESIDUE EDO A1153
02	AC2	SOFTWARE	THR A:132 , EDO A:1157	BINDING SITE FOR RESIDUE EDO A1154
03	AC3	SOFTWARE	ASP B:40 , GLY B:43 , HOH B:2014	BINDING SITE FOR RESIDUE EDO B1153
04	AC4	SOFTWARE	PRO B:8 , LEU B:42 , TRP B:144 , ALA B:145 , THR B:148 , HOH B:2039	BINDING SITE FOR RESIDUE EDO B1154
05	AC5	SOFTWARE	ASP B:16 , PRO B:33 , GLY B:34 , GLU B:35 , GLY B:36 , PRO B:37 , ARG B:47	BINDING SITE FOR RESIDUE EDO B1155
06	AC6	SOFTWARE	ASP A:40 , GLY A:43 , HOH A:2017	BINDING SITE FOR RESIDUE EDO A1155
07	AC7	SOFTWARE	ASP A:16 , PRO A:33 , GLY A:34 , GLU A:35 , GLY A:36 , PRO A:37 , ARG A:47	BINDING SITE FOR RESIDUE EDO A1156
08	AC8	SOFTWARE	GLN B:76 , THR B:80 , TRP B:125 , GLU B:128	BINDING SITE FOR RESIDUE EDO B1156
09	AC9	SOFTWARE	LYS B:21 , ASP B:51 , GLU B:54 , THR B:55 , ARG B:58	BINDING SITE FOR RESIDUE EDO B1157
10	BC1	SOFTWARE	GLN A:76 , THR A:80 , TRP A:125 , GLU A:128 , EDO A:1154	BINDING SITE FOR RESIDUE EDO A1157
11	BC2	SOFTWARE	ARG B:23 , SER B:29 , GLU B:35 , GLY B:36 , HOH B:2035	BINDING SITE FOR RESIDUE EDO B1158
12	BC3	SOFTWARE	GLN B:67 , PRO Q:41	BINDING SITE FOR RESIDUE EDO B1159
13	BC4	SOFTWARE	ASP A:136 , TRP A:137 , SER A:140 , HOH A:2128	BINDING SITE FOR RESIDUE EDO A1158
14	BC5	SOFTWARE	ASP A:51 , GLU A:52 , THR A:55 , HOH A:2047	BINDING SITE FOR RESIDUE EDO A1159
15	BC6	SOFTWARE	GLY A:36 , ARG A:47	BINDING SITE FOR RESIDUE EDO A1160
16	BC7	SOFTWARE	TYR A:20 , GLN A:44 , HOH A:2045 , HOH A:2049	BINDING SITE FOR RESIDUE EDO A1161

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

PROSITE Motifs (5, 12)

Asymmetric Unit (5, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BH4_1	PS01260	Apoptosis regulator, Bcl-2 family BH4 motif signature.	B2CL2_HUMAN	9-29	2	A:9-28 B:9-28
2	BH4_2	PS50063	Apoptosis regulator, Bcl-2 family BH4 motif profile.	B2CL2_HUMAN	10-27	2	A:10-27 B:10-27
3	BCL2_FAMILY	PS50062	BCL2-like apoptosis inhibitors family profile.	B2CL2_HUMAN	46-146	4	A:47-146 B:47-146 P:47-58 Q:47-58
4	BH1	PS01080	Apoptosis regulator, Bcl-2 family BH1 motif signature.	B2CL2_HUMAN	85-104	2	A:85-104 B:85-104
5	BH2	PS01258	Apoptosis regulator, Bcl-2 family BH2 motif signature.	B2CL2_HUMAN	137-148	2	A:137-148 B:137-148

Biological Unit 1 (5, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BH4_1	PS01260	Apoptosis regulator, Bcl-2 family BH4 motif signature.	B2CL2_HUMAN	9-29	1	- B:9-28
2	BH4_2	PS50063	Apoptosis regulator, Bcl-2 family BH4 motif profile.	B2CL2_HUMAN	10-27	1	- B:10-27
3	BCL2_FAMILY	PS50062	BCL2-like apoptosis inhibitors family profile.	B2CL2_HUMAN	46-146	2	- B:47-146 - Q:47-58
4	BH1	PS01080	Apoptosis regulator, Bcl-2 family BH1 motif signature.	B2CL2_HUMAN	85-104	1	- B:85-104
5	BH2	PS01258	Apoptosis regulator, Bcl-2 family BH2 motif signature.	B2CL2_HUMAN	137-148	1	- B:137-148

Biological Unit 2 (5, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BH4_1	PS01260	Apoptosis regulator, Bcl-2 family BH4 motif signature.	B2CL2_HUMAN	9-29	1	A:9-28 -
2	BH4_2	PS50063	Apoptosis regulator, Bcl-2 family BH4 motif profile.	B2CL2_HUMAN	10-27	1	A:10-27 -
3	BCL2_FAMILY	PS50062	BCL2-like apoptosis inhibitors family profile.	B2CL2_HUMAN	46-146	2	A:47-146 - P:47-58 -
4	BH1	PS01080	Apoptosis regulator, Bcl-2 family BH1 motif signature.	B2CL2_HUMAN	85-104	1	A:85-104 -
5	BH2	PS01258	Apoptosis regulator, Bcl-2 family BH2 motif signature.	B2CL2_HUMAN	137-148	1	A:137-148 -

Exons (2, 6)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:146
 aligned with B2CL2_HUMAN | Q92843 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:146
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146      
          B2CL2_HUMAN     7 APDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWMVAYLETQLADWIHSSGGWAEFTALYG 152
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------R------------------- SAPs(SNPs)
                PROSITE (1) --BH4_1  PDB: A:9-28   ----------------BCL2_FAMILY  PDB: A:47-146 UniProt: 46-146                                                           ------ PROSITE (1)
                PROSITE (2) ---BH4_2  PDB: A:10-2---------------------------------------------------------BH1  PDB: A:85-104  --------------------------------BH2         ---- PROSITE (2)
               Transcript 1 Exon 1.3  PDB: A:7-144 UniProt: 1-144 [INCOMPLETE]                                                                                        Exon 1.4 Transcript 1
                 4cim A   7 APDTRALVADFVGYKLRQKGYVSGAGPGEGPAADPLGQALRAIGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWMVEYLETRLADWIHSSGGWAEFTALYG 152
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain B from PDB  Type:PROTEIN  Length:145
 aligned with B2CL2_HUMAN | Q92843 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:145
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147     
          B2CL2_HUMAN     8 PDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWMVAYLETQLADWIHSSGGWAEFTALYG 152
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhh.hhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------R------------------- SAPs(SNPs)
                PROSITE (1) -BH4_1  PDB: B:9-28   ----------------BCL2_FAMILY  PDB: B:47-146 UniProt: 46-146                                                           ------ PROSITE (1)
                PROSITE (2) --BH4_2  PDB: B:10-2---------------------------------------------------------BH1  PDB: B:85-104  --------------------------------BH2         ---- PROSITE (2)
               Transcript 1 Exon 1.3  PDB: B:8-144 UniProt: 1-144 [INCOMPLETE]                                                                                       Exon 1.4 Transcript 1
                 4cim B   8 PDTRALVADFVGYKLRQKGYVSGAGPGEGPAADPLGQALRAIGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWMVEYLETRLADWIHSSGGWAEFTALYG 152
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147

Chain P from PDB  Type:PROTEIN  Length:21
 aligned with B2CL2_HUMAN | Q92843 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:21
                                    47        57 
          B2CL2_HUMAN    38 AADPLHQAMRAAGDEFETRFR  58
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                PROSITE (1) --------BCL2_FAMILY   PROSITE (1)
                PROSITE (2) --------------------- PROSITE (2)
               Transcript 1 Exon 1.3  PDB: P:38-5 Transcript 1
                 4cim P  38 AADPLGQALRAIGDEFETRFR  58
                                    47        57

Chain Q from PDB  Type:PROTEIN  Length:21
 aligned with B2CL2_HUMAN | Q92843 from UniProtKB/Swiss-Prot  Length:193

    Alignment length:21
                                    47        57 
          B2CL2_HUMAN    38 AADPLHQAMRAAGDEFETRFR  58
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                PROSITE (1) --------BCL2_FAMILY   PROSITE (1)
                PROSITE (2) --------------------- PROSITE (2)
               Transcript 1 Exon 1.3  PDB: Q:38-5 Transcript 1
                 4cim Q  38 AADPLGQALRAIGDEFETRFR  58
                                    47        57

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (19, 19)

Asymmetric Unit(hide GO term definitions)

Chain A,B,P,Q (B2CL2_HUMAN | Q92843)

molecular function
	GO:0051400	BH domain binding	Interacting selectively and non-covalently with the Bcl-2 homology (BH) domain of a protein. Bcl-2-related proteins share homology in one to four conserved regions designated the Bcl-2 homology (BH) domains BH1, BH2, BH3 and BH4. These domains contribute at multiple levels to the function of these proteins in cell death and survival. Anti-apoptotic members of the Bcl-2 family have four BH domains (BH1-BH4). Pro-apoptotic members have fewer BH domains.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0060011	Sertoli cell proliferation	The multiplication or reproduction of Sertoli cells, resulting in the expansion of the Sertoli cell population. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules.
	GO:0006915	apoptotic process	A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
	GO:0097192	extrinsic apoptotic signaling pathway in absence of ligand	A series of molecular signals in which a signal is conveyed from the cell surface to trigger the apoptotic death of a cell. The pathway starts with withdrawal of a ligand from a cell surface receptor, and ends when the execution phase of apoptosis is triggered.
	GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	A series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the detection of DNA damage, and ends when the execution phase of apoptosis is triggered.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:2001243	negative regulation of intrinsic apoptotic signaling pathway	Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway.
	GO:0042981	regulation of apoptotic process	Any process that modulates the occurrence or rate of cell death by apoptotic process.
	GO:0007283	spermatogenesis	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0031966	mitochondrial membrane	Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
	GO:0005741	mitochondrial outer membrane	The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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	Cis Peptide Bonds
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	4cim
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	B2CL2_HUMAN \| Q92843
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 16)

Sites (16, 16)