4CDC - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   HUMAN DPP1 IN COMPLEX WITH (2S)-2-AMINO-N-((1S)-1-CYANO-2-( 4-PHENYLPHENYL)ETHYL)BUTANAMIDE

Authors :   J. Debreczeni, K. Edman, M. Furber, A. Tiden, P. Gardiner, T. Mete, R. Fo I. Millichip, L. Stein, A. Mather, E. Kinchin, C. Luckhurst, P. Cage, H. Sanghanee, J. Breed, L. Wissler

Date :   31 Oct 13 (Deposition) - 19 Mar 14 (Release) - 09 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: G,H,I  (1x)
Biol. Unit 2: D,E,F  (1x)
Biol. Unit 3: A,B,C  (1x)
Biol. Unit 4: J,K,L  (1x)

Keywords :   Hydrolase, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Furber, P. Gardiner, A. K. Tiden, A. Mete, R. Ford, I. Millichip, L. Stein, A. Mather, E. Kinchin, C. Luckhurst, S. Barber, P. Cage, H. Sanganee, R. Austin, K. Chohan, R. Beri, B. Thong, A. Wallace, V. Oreffo, R. Hutchinson, S. Harper, J. Debreczeni, J. Breed, L. Wissler, K. Edman
Cathepsin C Inhibitors: Property Optimization And Identification Of A Clinical Candidate.
J. Med. Chem. V. 57 2357 2014
PubMed-ID: 24592859 | Reference-DOI: 10.1021/JM401705G

Molecule 1 - DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN
	Chains	:	A, D, G, J
	EC Number	:	3.4.14.1
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF21
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	DPP1 EXCLUSION DOMAIN, RESIDUES 25-143
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	DIPEPTIDYL PEPTIDASE I EXCLUSION DOMAIN CHAIN, CATHEPSIN C, CATHEPSIN J, DIPEPTIDYL PEPTIDASE I, DPP-I, DPPI, DIPEPTIDYL TRANSFERASE

Molecule 2 - DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN
	Chains	:	B, E, H, K
	EC Number	:	3.4.14.1
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF21
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	DPP1 HEAVY CHAIN, RESIDUES 230-394
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	DIPEPTIDYL PEPTIDASE I HEAVY CHAIN, CATHEPSIN C, CATHEPSIN J, DIPEPTIDYL PEPTIDASE I, DPP-I, DPPI, DIPEPTIDYL TRANSFERASE

Molecule 3 - DIPEPTIDYL PEPTIDASE 1 LIGHT CHAIN
	Chains	:	C, F, I, L
	EC Number	:	3.4.14.1
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF21
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	DIPEPTIDYL PEPTIDASE I LIGHT CHAIN, CATHEPSIN C, CATHEPSIN J, DIPEPTIDYL PEPTIDASE I, DPP-I, DPPI, DIPEPTIDYL TRANSFERASE

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:							G	H	I
Biological Unit 2 (1x)	:				D	E	F
Biological Unit 3 (1x)	:	A	B	C
Biological Unit 4 (1x)	:										J	K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 19)

No.	Name	Count	Type	Full Name
1	6AO	4	Ligand/Ion	(2S)-2-AZANYL-N-[(2S)-1-AZANYLIDENE-3-(4-PHENYLPHENYL)PROPAN-2-YL]BUTANAMIDE
2	CL	4	Ligand/Ion	CHLORIDE ION
3	GOL	4	Ligand/Ion	GLYCEROL
4	NAG	7	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	6AO	1	Ligand/Ion	(2S)-2-AZANYL-N-[(2S)-1-AZANYLIDENE-3-(4-PHENYLPHENYL)PROPAN-2-YL]BUTANAMIDE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GOL	2	Ligand/Ion	GLYCEROL
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	6AO	1	Ligand/Ion	(2S)-2-AZANYL-N-[(2S)-1-AZANYLIDENE-3-(4-PHENYLPHENYL)PROPAN-2-YL]BUTANAMIDE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GOL	1	Ligand/Ion	GLYCEROL
4	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	6AO	1	Ligand/Ion	(2S)-2-AZANYL-N-[(2S)-1-AZANYLIDENE-3-(4-PHENYLPHENYL)PROPAN-2-YL]BUTANAMIDE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GOL	-1	Ligand/Ion	GLYCEROL
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 4 (3, 4)

No.	Name	Count	Type	Full Name
1	6AO	1	Ligand/Ion	(2S)-2-AZANYL-N-[(2S)-1-AZANYLIDENE-3-(4-PHENYLPHENYL)PROPAN-2-YL]BUTANAMIDE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	GOL	1	Ligand/Ion	GLYCEROL
4	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:1 , GLN B:228 , CYS B:234 , GLU B:275 , GLY B:276 , GLY B:277 , PHE B:278 , ASN C:380	BINDING SITE FOR RESIDUE 6AO B1368
02	AC2	SOFTWARE	PHE B:314 , LYS C:438 , LEU C:439 , SER D:22 , GLY D:23 , TYR D:75 , ASN D:109 , TRP D:110 , ALA D:111	BINDING SITE FOR RESIDUE GOL D1120
03	AC3	SOFTWARE	ASP D:1 , HOH D:2001 , GLN E:228 , GLY E:232 , CYS E:234 , GLY E:276 , GLY E:277 , PHE E:278 , ALA E:349 , ASN F:380 , HIS F:381 , ASP K:354 , LEU K:357 , HIS K:358	BINDING SITE FOR RESIDUE 6AO E1368
04	AC4	SOFTWARE	SER G:57 , GLY G:58 , HIS G:59 , VAL G:71 , ASN G:73 , ASP G:74	BINDING SITE FOR RESIDUE GOL G1121
05	AC5	SOFTWARE	LYS G:76 , VAL G:105 , HOH G:2029 , GLN H:288 , SER H:319 , LEU J:106	BINDING SITE FOR RESIDUE GOL G1122
06	AC6	SOFTWARE	ASP G:1 , HOH G:2001 , GLN H:228 , CYS H:234 , GLU H:275 , GLY H:276 , GLY H:277 , PHE H:278 , ASN I:380	BINDING SITE FOR RESIDUE 6AO H1368
07	AC7	SOFTWARE	ASP E:354 , LEU E:357 , HIS E:358 , ASP J:1 , GLN K:228 , CYS K:234 , GLU K:275 , GLY K:276 , GLY K:277 , PHE K:278 , ALA K:349 , ASN L:380	BINDING SITE FOR RESIDUE 6AO K1368
08	AC8	SOFTWARE	HIS K:322 , VAL K:324 , GLY K:325 , GLY K:326 , LEU K:335 , GLU K:339	BINDING SITE FOR RESIDUE GOL K1370
09	AC9	SOFTWARE	PHE B:278 , TYR B:280 , TYR B:323	BINDING SITE FOR RESIDUE CL B1370
10	BC1	SOFTWARE	PHE E:278 , PRO E:279 , TYR E:280 , TYR E:323 , VAL F:431	BINDING SITE FOR RESIDUE CL E1369
11	BC2	SOFTWARE	PHE H:278 , PRO H:279 , TYR H:280 , TYR H:323 , VAL I:431	BINDING SITE FOR RESIDUE CL H1370
12	BC3	SOFTWARE	PHE K:278 , PRO K:279 , TYR K:280 , TYR K:323	BINDING SITE FOR RESIDUE CL K1371
13	BC4	SOFTWARE	ASN A:5 , ASN A:65 , PHE C:376 , LEU C:378	BINDING SITE FOR MONO-SACCHARIDE NAG A1120 BOUND TO ASN A 5
14	BC5	SOFTWARE	ASN B:252 , LEU H:207 , THR H:209	BINDING SITE FOR MONO-SACCHARIDE NAG B1369 BOUND TO ASN B 252
15	BC6	SOFTWARE	ASN D:5 , HOH D:2003	BINDING SITE FOR MONO-SACCHARIDE NAG D1119 BOUND TO ASN D 5
16	BC7	SOFTWARE	ASN G:5 , ASN G:65 , PHE I:376	BINDING SITE FOR MONO-SACCHARIDE NAG G1120 BOUND TO ASN G 5
17	BC8	SOFTWARE	LEU B:207 , THR B:209 , ASN H:252	BINDING SITE FOR MONO-SACCHARIDE NAG H1369 BOUND TO ASN H 252
18	BC9	SOFTWARE	ASN J:5 , LEU L:378	BINDING SITE FOR MONO-SACCHARIDE NAG J1120 BOUND TO ASN J 5
19	CC1	SOFTWARE	THR E:209 , LEU G:54 , ASN K:252	BINDING SITE FOR MONO-SACCHARIDE NAG K1369 BOUND TO ASN K 252

Asymmetric Unit

No.	Residues
1	A:6	-	A:94
2	A:30	-	A:112
3	B:231	-	B:274
4	B:267	-	B:307
5	B:297	-	B:313
6	D:6	-	D:94
7	D:30	-	D:112
8	E:231	-	E:274
9	E:267	-	E:307
10	G:6	-	G:94
11	G:30	-	G:112
12	H:231	-	H:274
13	H:267	-	H:307
14	H:297	-	H:313
15	J:6	-	J:94
16	J:30	-	J:112
17	K:231	-	K:274
18	K:267	-	K:307
19	K:297	-	K:313

Asymmetric Unit

No.	Residues
1	Lys A:46	-	Leu A:47
2	Lys D:46	-	Leu D:47
3	Lys G:46	-	Leu G:47
4	Lys J:46	-	Leu J:47

Asymmetric Unit (29, 116)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_016933	W	39	S	CATC_HUMAN	Disease (PLS)	104894210	A/D/G/J	W	15	S
02	UniProt	VAR_016934	H	127	P	CATC_HUMAN	Disease (PLS)	104894216	A/D/G/J	H	103	P
03	UniProt	VAR_019036	V	129	E	CATC_HUMAN	Disease (PLS)	760130711	A/D/G/J	V	105	E
04	UniProt	VAR_019037	G	139	R	CATC_HUMAN	Disease (PLS)	749103588	A/D/G/J	G	115	R
05	UniProt	VAR_019038	D	236	Y	CATC_HUMAN	Disease (PLS)	764724707	B/E/H/K	D	212	Y
06	UniProt	VAR_009541	V	249	F	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	V	225	F
07	UniProt	VAR_009542	Q	252	L	CATC_HUMAN	Disease (PLS)	104894207	B/E/H/K	Q	228	L
08	UniProt	VAR_019039	R	272	H	CATC_HUMAN	Disease (PLS)	587777534	B/E/H/K	R	248	H
09	UniProt	VAR_009543	R	272	P	CATC_HUMAN	Disease (PLS)	587777534	B/E/H/K	R	248	P
10	UniProt	VAR_016935	Q	286	R	CATC_HUMAN	Disease (PLS)	104894208	B/E/H/K	Q	262	R
11	UniProt	VAR_019040	C	291	Y	CATC_HUMAN	Disease (PLS)	748729285	B/E/H/K	C	267	Y
12	UniProt	VAR_039686	Y	294	H	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	Y	270	H
13	UniProt	VAR_019041	G	300	D	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	G	276	D
14	UniProt	VAR_019042	G	300	S	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	G	276	S
15	UniProt	VAR_009544	G	301	S	CATC_HUMAN	Disease (PLS)	104894214	B/E/H/K	G	277	S
16	UniProt	VAR_019043	G	301	V	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	G	277	V
17	UniProt	VAR_019044	Y	304	N	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	Y	280	N
18	UniProt	VAR_019045	Q	312	R	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	Q	288	R
19	UniProt	VAR_019046	E	319	G	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	E	295	G
20	UniProt	VAR_009545	R	339	C	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	R	315	C
21	UniProt	VAR_016944	Y	340	C	CATC_HUMAN	Disease (PLS)	---	B/E/H/K	Y	316	C
22	UniProt	VAR_009546	Y	347	C	CATC_HUMAN	Disease (AP1)	104894211	B/E/H/K	Y	323	C
23	UniProt	VAR_016945	E	401	K	CATC_HUMAN	Polymorphism	200627023	C/F/I/L	E	377	K
24	UniProt	VAR_027249	H	405	N	CATC_HUMAN	Disease (PLS)	---	C/F/I/L	H	381	N
25	UniProt	VAR_027250	H	405	R	CATC_HUMAN	Disease (PLS)	151269219	C/F/I/L	H	381	R
26	UniProt	VAR_019047	Y	412	C	CATC_HUMAN	Disease (AP1)	28937571	C/F/I/L	Y	388	C
27	UniProt	VAR_016936	W	429	C	CATC_HUMAN	Disease (PLS)	104894215	C/F/I/L	W	405	C
28	UniProt	VAR_019048	E	447	G	CATC_HUMAN	Disease (PLS)	---	C/F/I/L	E	423	G
29	UniProt	VAR_016946	I	453	V	CATC_HUMAN	Polymorphism	3888798	C/F/I/L	I	429	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (29, 29)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_016933	W	39	S	CATC_HUMAN	Disease (PLS)	104894210	G	W	15	S
02	UniProt	VAR_016934	H	127	P	CATC_HUMAN	Disease (PLS)	104894216	G	H	103	P
03	UniProt	VAR_019036	V	129	E	CATC_HUMAN	Disease (PLS)	760130711	G	V	105	E
04	UniProt	VAR_019037	G	139	R	CATC_HUMAN	Disease (PLS)	749103588	G	G	115	R
05	UniProt	VAR_019038	D	236	Y	CATC_HUMAN	Disease (PLS)	764724707	H	D	212	Y
06	UniProt	VAR_009541	V	249	F	CATC_HUMAN	Disease (PLS)	---	H	V	225	F
07	UniProt	VAR_009542	Q	252	L	CATC_HUMAN	Disease (PLS)	104894207	H	Q	228	L
08	UniProt	VAR_019039	R	272	H	CATC_HUMAN	Disease (PLS)	587777534	H	R	248	H
09	UniProt	VAR_009543	R	272	P	CATC_HUMAN	Disease (PLS)	587777534	H	R	248	P
10	UniProt	VAR_016935	Q	286	R	CATC_HUMAN	Disease (PLS)	104894208	H	Q	262	R
11	UniProt	VAR_019040	C	291	Y	CATC_HUMAN	Disease (PLS)	748729285	H	C	267	Y
12	UniProt	VAR_039686	Y	294	H	CATC_HUMAN	Disease (PLS)	---	H	Y	270	H
13	UniProt	VAR_019041	G	300	D	CATC_HUMAN	Disease (PLS)	---	H	G	276	D
14	UniProt	VAR_019042	G	300	S	CATC_HUMAN	Disease (PLS)	---	H	G	276	S
15	UniProt	VAR_009544	G	301	S	CATC_HUMAN	Disease (PLS)	104894214	H	G	277	S
16	UniProt	VAR_019043	G	301	V	CATC_HUMAN	Disease (PLS)	---	H	G	277	V
17	UniProt	VAR_019044	Y	304	N	CATC_HUMAN	Disease (PLS)	---	H	Y	280	N
18	UniProt	VAR_019045	Q	312	R	CATC_HUMAN	Disease (PLS)	---	H	Q	288	R
19	UniProt	VAR_019046	E	319	G	CATC_HUMAN	Disease (PLS)	---	H	E	295	G
20	UniProt	VAR_009545	R	339	C	CATC_HUMAN	Disease (PLS)	---	H	R	315	C
21	UniProt	VAR_016944	Y	340	C	CATC_HUMAN	Disease (PLS)	---	H	Y	316	C
22	UniProt	VAR_009546	Y	347	C	CATC_HUMAN	Disease (AP1)	104894211	H	Y	323	C
23	UniProt	VAR_016945	E	401	K	CATC_HUMAN	Polymorphism	200627023	I	E	377	K
24	UniProt	VAR_027249	H	405	N	CATC_HUMAN	Disease (PLS)	---	I	H	381	N
25	UniProt	VAR_027250	H	405	R	CATC_HUMAN	Disease (PLS)	151269219	I	H	381	R
26	UniProt	VAR_019047	Y	412	C	CATC_HUMAN	Disease (AP1)	28937571	I	Y	388	C
27	UniProt	VAR_016936	W	429	C	CATC_HUMAN	Disease (PLS)	104894215	I	W	405	C
28	UniProt	VAR_019048	E	447	G	CATC_HUMAN	Disease (PLS)	---	I	E	423	G
29	UniProt	VAR_016946	I	453	V	CATC_HUMAN	Polymorphism	3888798	I	I	429	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (29, 29)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_016933	W	39	S	CATC_HUMAN	Disease (PLS)	104894210	D	W	15	S
02	UniProt	VAR_016934	H	127	P	CATC_HUMAN	Disease (PLS)	104894216	D	H	103	P
03	UniProt	VAR_019036	V	129	E	CATC_HUMAN	Disease (PLS)	760130711	D	V	105	E
04	UniProt	VAR_019037	G	139	R	CATC_HUMAN	Disease (PLS)	749103588	D	G	115	R
05	UniProt	VAR_019038	D	236	Y	CATC_HUMAN	Disease (PLS)	764724707	E	D	212	Y
06	UniProt	VAR_009541	V	249	F	CATC_HUMAN	Disease (PLS)	---	E	V	225	F
07	UniProt	VAR_009542	Q	252	L	CATC_HUMAN	Disease (PLS)	104894207	E	Q	228	L
08	UniProt	VAR_019039	R	272	H	CATC_HUMAN	Disease (PLS)	587777534	E	R	248	H
09	UniProt	VAR_009543	R	272	P	CATC_HUMAN	Disease (PLS)	587777534	E	R	248	P
10	UniProt	VAR_016935	Q	286	R	CATC_HUMAN	Disease (PLS)	104894208	E	Q	262	R
11	UniProt	VAR_019040	C	291	Y	CATC_HUMAN	Disease (PLS)	748729285	E	C	267	Y
12	UniProt	VAR_039686	Y	294	H	CATC_HUMAN	Disease (PLS)	---	E	Y	270	H
13	UniProt	VAR_019041	G	300	D	CATC_HUMAN	Disease (PLS)	---	E	G	276	D
14	UniProt	VAR_019042	G	300	S	CATC_HUMAN	Disease (PLS)	---	E	G	276	S
15	UniProt	VAR_009544	G	301	S	CATC_HUMAN	Disease (PLS)	104894214	E	G	277	S
16	UniProt	VAR_019043	G	301	V	CATC_HUMAN	Disease (PLS)	---	E	G	277	V
17	UniProt	VAR_019044	Y	304	N	CATC_HUMAN	Disease (PLS)	---	E	Y	280	N
18	UniProt	VAR_019045	Q	312	R	CATC_HUMAN	Disease (PLS)	---	E	Q	288	R
19	UniProt	VAR_019046	E	319	G	CATC_HUMAN	Disease (PLS)	---	E	E	295	G
20	UniProt	VAR_009545	R	339	C	CATC_HUMAN	Disease (PLS)	---	E	R	315	C
21	UniProt	VAR_016944	Y	340	C	CATC_HUMAN	Disease (PLS)	---	E	Y	316	C
22	UniProt	VAR_009546	Y	347	C	CATC_HUMAN	Disease (AP1)	104894211	E	Y	323	C
23	UniProt	VAR_016945	E	401	K	CATC_HUMAN	Polymorphism	200627023	F	E	377	K
24	UniProt	VAR_027249	H	405	N	CATC_HUMAN	Disease (PLS)	---	F	H	381	N
25	UniProt	VAR_027250	H	405	R	CATC_HUMAN	Disease (PLS)	151269219	F	H	381	R
26	UniProt	VAR_019047	Y	412	C	CATC_HUMAN	Disease (AP1)	28937571	F	Y	388	C
27	UniProt	VAR_016936	W	429	C	CATC_HUMAN	Disease (PLS)	104894215	F	W	405	C
28	UniProt	VAR_019048	E	447	G	CATC_HUMAN	Disease (PLS)	---	F	E	423	G
29	UniProt	VAR_016946	I	453	V	CATC_HUMAN	Polymorphism	3888798	F	I	429	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (29, 29)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_016933	W	39	S	CATC_HUMAN	Disease (PLS)	104894210	A	W	15	S
02	UniProt	VAR_016934	H	127	P	CATC_HUMAN	Disease (PLS)	104894216	A	H	103	P
03	UniProt	VAR_019036	V	129	E	CATC_HUMAN	Disease (PLS)	760130711	A	V	105	E
04	UniProt	VAR_019037	G	139	R	CATC_HUMAN	Disease (PLS)	749103588	A	G	115	R
05	UniProt	VAR_019038	D	236	Y	CATC_HUMAN	Disease (PLS)	764724707	B	D	212	Y
06	UniProt	VAR_009541	V	249	F	CATC_HUMAN	Disease (PLS)	---	B	V	225	F
07	UniProt	VAR_009542	Q	252	L	CATC_HUMAN	Disease (PLS)	104894207	B	Q	228	L
08	UniProt	VAR_019039	R	272	H	CATC_HUMAN	Disease (PLS)	587777534	B	R	248	H
09	UniProt	VAR_009543	R	272	P	CATC_HUMAN	Disease (PLS)	587777534	B	R	248	P
10	UniProt	VAR_016935	Q	286	R	CATC_HUMAN	Disease (PLS)	104894208	B	Q	262	R
11	UniProt	VAR_019040	C	291	Y	CATC_HUMAN	Disease (PLS)	748729285	B	C	267	Y
12	UniProt	VAR_039686	Y	294	H	CATC_HUMAN	Disease (PLS)	---	B	Y	270	H
13	UniProt	VAR_019041	G	300	D	CATC_HUMAN	Disease (PLS)	---	B	G	276	D
14	UniProt	VAR_019042	G	300	S	CATC_HUMAN	Disease (PLS)	---	B	G	276	S
15	UniProt	VAR_009544	G	301	S	CATC_HUMAN	Disease (PLS)	104894214	B	G	277	S
16	UniProt	VAR_019043	G	301	V	CATC_HUMAN	Disease (PLS)	---	B	G	277	V
17	UniProt	VAR_019044	Y	304	N	CATC_HUMAN	Disease (PLS)	---	B	Y	280	N
18	UniProt	VAR_019045	Q	312	R	CATC_HUMAN	Disease (PLS)	---	B	Q	288	R
19	UniProt	VAR_019046	E	319	G	CATC_HUMAN	Disease (PLS)	---	B	E	295	G
20	UniProt	VAR_009545	R	339	C	CATC_HUMAN	Disease (PLS)	---	B	R	315	C
21	UniProt	VAR_016944	Y	340	C	CATC_HUMAN	Disease (PLS)	---	B	Y	316	C
22	UniProt	VAR_009546	Y	347	C	CATC_HUMAN	Disease (AP1)	104894211	B	Y	323	C
23	UniProt	VAR_016945	E	401	K	CATC_HUMAN	Polymorphism	200627023	C	E	377	K
24	UniProt	VAR_027249	H	405	N	CATC_HUMAN	Disease (PLS)	---	C	H	381	N
25	UniProt	VAR_027250	H	405	R	CATC_HUMAN	Disease (PLS)	151269219	C	H	381	R
26	UniProt	VAR_019047	Y	412	C	CATC_HUMAN	Disease (AP1)	28937571	C	Y	388	C
27	UniProt	VAR_016936	W	429	C	CATC_HUMAN	Disease (PLS)	104894215	C	W	405	C
28	UniProt	VAR_019048	E	447	G	CATC_HUMAN	Disease (PLS)	---	C	E	423	G
29	UniProt	VAR_016946	I	453	V	CATC_HUMAN	Polymorphism	3888798	C	I	429	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (29, 29)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_016933	W	39	S	CATC_HUMAN	Disease (PLS)	104894210	J	W	15	S
02	UniProt	VAR_016934	H	127	P	CATC_HUMAN	Disease (PLS)	104894216	J	H	103	P
03	UniProt	VAR_019036	V	129	E	CATC_HUMAN	Disease (PLS)	760130711	J	V	105	E
04	UniProt	VAR_019037	G	139	R	CATC_HUMAN	Disease (PLS)	749103588	J	G	115	R
05	UniProt	VAR_019038	D	236	Y	CATC_HUMAN	Disease (PLS)	764724707	K	D	212	Y
06	UniProt	VAR_009541	V	249	F	CATC_HUMAN	Disease (PLS)	---	K	V	225	F
07	UniProt	VAR_009542	Q	252	L	CATC_HUMAN	Disease (PLS)	104894207	K	Q	228	L
08	UniProt	VAR_019039	R	272	H	CATC_HUMAN	Disease (PLS)	587777534	K	R	248	H
09	UniProt	VAR_009543	R	272	P	CATC_HUMAN	Disease (PLS)	587777534	K	R	248	P
10	UniProt	VAR_016935	Q	286	R	CATC_HUMAN	Disease (PLS)	104894208	K	Q	262	R
11	UniProt	VAR_019040	C	291	Y	CATC_HUMAN	Disease (PLS)	748729285	K	C	267	Y
12	UniProt	VAR_039686	Y	294	H	CATC_HUMAN	Disease (PLS)	---	K	Y	270	H
13	UniProt	VAR_019041	G	300	D	CATC_HUMAN	Disease (PLS)	---	K	G	276	D
14	UniProt	VAR_019042	G	300	S	CATC_HUMAN	Disease (PLS)	---	K	G	276	S
15	UniProt	VAR_009544	G	301	S	CATC_HUMAN	Disease (PLS)	104894214	K	G	277	S
16	UniProt	VAR_019043	G	301	V	CATC_HUMAN	Disease (PLS)	---	K	G	277	V
17	UniProt	VAR_019044	Y	304	N	CATC_HUMAN	Disease (PLS)	---	K	Y	280	N
18	UniProt	VAR_019045	Q	312	R	CATC_HUMAN	Disease (PLS)	---	K	Q	288	R
19	UniProt	VAR_019046	E	319	G	CATC_HUMAN	Disease (PLS)	---	K	E	295	G
20	UniProt	VAR_009545	R	339	C	CATC_HUMAN	Disease (PLS)	---	K	R	315	C
21	UniProt	VAR_016944	Y	340	C	CATC_HUMAN	Disease (PLS)	---	K	Y	316	C
22	UniProt	VAR_009546	Y	347	C	CATC_HUMAN	Disease (AP1)	104894211	K	Y	323	C
23	UniProt	VAR_016945	E	401	K	CATC_HUMAN	Polymorphism	200627023	L	E	377	K
24	UniProt	VAR_027249	H	405	N	CATC_HUMAN	Disease (PLS)	---	L	H	381	N
25	UniProt	VAR_027250	H	405	R	CATC_HUMAN	Disease (PLS)	151269219	L	H	381	R
26	UniProt	VAR_019047	Y	412	C	CATC_HUMAN	Disease (AP1)	28937571	L	Y	388	C
27	UniProt	VAR_016936	W	429	C	CATC_HUMAN	Disease (PLS)	104894215	L	W	405	C
28	UniProt	VAR_019048	E	447	G	CATC_HUMAN	Disease (PLS)	---	L	E	423	G
29	UniProt	VAR_016946	I	453	V	CATC_HUMAN	Polymorphism	3888798	L	I	429	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOL_PROTEASE_CYS	PS00139	Eukaryotic thiol (cysteine) proteases cysteine active site.	CATC_HUMAN	252-263	4	B:228-239 E:228-239 H:228-239 K:228-239
2	THIOL_PROTEASE_HIS	PS00639	Eukaryotic thiol (cysteine) proteases histidine active site.	CATC_HUMAN	403-413	4	C:379-389 F:379-389 I:379-389 L:379-389
3	THIOL_PROTEASE_ASN	PS00640	Eukaryotic thiol (cysteine) proteases asparagine active site.	CATC_HUMAN	422-441	4	C:398-417 F:398-417 I:398-417 L:398-417

Biological Unit 1 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOL_PROTEASE_CYS	PS00139	Eukaryotic thiol (cysteine) proteases cysteine active site.	CATC_HUMAN	252-263	1	- - H:228-239 -
2	THIOL_PROTEASE_HIS	PS00639	Eukaryotic thiol (cysteine) proteases histidine active site.	CATC_HUMAN	403-413	1	- - I:379-389 -
3	THIOL_PROTEASE_ASN	PS00640	Eukaryotic thiol (cysteine) proteases asparagine active site.	CATC_HUMAN	422-441	1	- - I:398-417 -

Biological Unit 2 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOL_PROTEASE_CYS	PS00139	Eukaryotic thiol (cysteine) proteases cysteine active site.	CATC_HUMAN	252-263	1	- E:228-239 - -
2	THIOL_PROTEASE_HIS	PS00639	Eukaryotic thiol (cysteine) proteases histidine active site.	CATC_HUMAN	403-413	1	- F:379-389 - -
3	THIOL_PROTEASE_ASN	PS00640	Eukaryotic thiol (cysteine) proteases asparagine active site.	CATC_HUMAN	422-441	1	- F:398-417 - -

Biological Unit 3 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOL_PROTEASE_CYS	PS00139	Eukaryotic thiol (cysteine) proteases cysteine active site.	CATC_HUMAN	252-263	1	B:228-239 - - -
2	THIOL_PROTEASE_HIS	PS00639	Eukaryotic thiol (cysteine) proteases histidine active site.	CATC_HUMAN	403-413	1	C:379-389 - - -
3	THIOL_PROTEASE_ASN	PS00640	Eukaryotic thiol (cysteine) proteases asparagine active site.	CATC_HUMAN	422-441	1	C:398-417 - - -

Biological Unit 4 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	THIOL_PROTEASE_CYS	PS00139	Eukaryotic thiol (cysteine) proteases cysteine active site.	CATC_HUMAN	252-263	1	- - - K:228-239
2	THIOL_PROTEASE_HIS	PS00639	Eukaryotic thiol (cysteine) proteases histidine active site.	CATC_HUMAN	403-413	1	- - - L:379-389
3	THIOL_PROTEASE_ASN	PS00640	Eukaryotic thiol (cysteine) proteases asparagine active site.	CATC_HUMAN	422-441	1	- - - L:398-417

Asymmetric Unit (6, 28)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000227266	1a	ENSE00002140483	chr11:88070955-88070669	287	CATC_HUMAN	1-58	58	4	A:1-34 - - D:1-34 - - G:1-34 - - J:1-34 - -	34 - - 34 - - 34 - - 34 - -
1.2a	ENST00000227266	2a	ENSE00000743353	chr11:88068250-88068105	146	CATC_HUMAN	58-106	49	4	A:34-82 - - D:34-82 - - G:34-82 - - J:34-82 - -	49 - - 49 - - 49 - - 49 - -
1.6	ENST00000227266	6	ENSE00000743352	chr11:88045722-88045556	167	CATC_HUMAN	107-162	56	4	A:83-119 (gaps) - - D:83-118 (gaps) - - G:83-119 (gaps) - - J:83-119 (gaps) - -	37 - - 36 - - 37 - - 37 - -
1.7b	ENST00000227266	7b	ENSE00000743351	chr11:88042486-88042331	156	CATC_HUMAN	162-214	53	0	-	-
1.8	ENST00000227266	8	ENSE00000743350	chr11:88033813-88033698	116	CATC_HUMAN	214-253	40	4	- B:206-229 - - E:206-229 - - H:206-229 - - K:206-229 -	- 24 - - 24 - - 24 - - 24 -
1.9c	ENST00000227266	9c	ENSE00000743349	chr11:88029432-88029301	132	CATC_HUMAN	253-297	45	4	- B:229-273 - - E:229-273 - - H:229-273 - - K:229-273 -	- 45 - - 45 - - 45 - - 45 -
1.10b	ENST00000227266	10b	ENSE00000842724	chr11:88027676-88026778	899	CATC_HUMAN	297-463	167	8	- B:273-367 C:372-439 - E:273-367 (gaps) F:372-439 - H:273-367 I:372-439 - K:273-367 L:372-439	- 95 68 - 95 68 - 95 68 - 95 68

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:114
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:119
                                    34        44        54        64        74        84        94       104       114       124       134         
           CATC_HUMAN    25 DTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYKEEGSKVTTYCNETMTGWVHDVLGRNWACFTGKKVG 143
               SCOP domains d4cdca_ A: Dipeptidyl peptidase I (cathepsin C), exclusion domain                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhheeeeeeeeeeee...........eeeeeeeeee...eee.....eeeeeee...eeeeee..eeeeeeeee.-----..eeeeee............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------S---------------------------------------------------------------------------------------P-E---------R---- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:1-34            ------------------------------------------------Exon 1.6  PDB: A:83-119 (gaps)        Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.2a  PDB: A:34-82 UniProt: 58-106          ------------------------------------- Transcript 1 (2)
                 4cdc A   1 DTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYK-----VTTYCNETMTGWVHDVLGRNWACFTGKKVG 119
                                    10        20        30        40        50        60        70        80   |    90       100       110         
                                                                                                              84    90

Chain B from PDB  Type:PROTEIN  Length:162
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:162
                                   239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389  
           CATC_HUMAN   230 HLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 391
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee....................hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh...hhh...hhhhhhhhhhhhh...........................eeeeee........hhhhhhhhhhhhh.eeeee..hhhhhh....ee... Sec.struct. author
             SAPs(SNPs) (1) ------Y------------F--L-------------------H-------------R----Y--H-----DS--N-------R------G-------------------CC------C-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------P---------------------------SV------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------THIOL_PROTEA-------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.8  PDB: B:206-229-------------------------------------------Exon 1.10b  PDB: B:273-367 UniProt: 297-463 [INCOMPLETE]                                        Transcript 1 (1)
           Transcript 1 (2) -----------------------Exon 1.9c  PDB: B:229-273 UniProt: 253-297   ---------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4cdc B 206 HLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 367
                                   215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365

Chain C from PDB  Type:PROTEIN  Length:68
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:68
                                   405       415       425       435       445       455        
           CATC_HUMAN   396 PFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL 463
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeee......eeeeee...........eeeee...hhhhh....eeeee.... Sec.struct. author
             SAPs(SNPs) (1) -----K---N------C----------------C-----------------G-----V---------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------R---------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------THIOL_PROTE--------THIOL_PROTEASE_ASN  ---------------------- PROSITE
           Transcript 1 (1) Exon 1.10b  PDB: C:372-439 UniProt: 297-463 [INCOMPLETE]             Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------- Transcript 1 (2)
                 4cdc C 372 PFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL 439
                                   381       391       401       411       421       431

Chain D from PDB  Type:PROTEIN  Length:114
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:118
                                    34        44        54        64        74        84        94       104       114       124       134        
           CATC_HUMAN    25 DTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYKEEGSKVTTYCNETMTGWVHDVLGRNWACFTGKKV 142
               SCOP domains d4cdcd_ D: Dipeptidyl peptidase I (cathepsin C), exclusion domain                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhheeeeeeeeeeee.............eeeeeeee...eeee....eeeeeee...eeeeee..eeeeeeeeee----..eeeeeee............eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------S---------------------------------------------------------------------------------------P-E---------R--- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: D:1-34            ------------------------------------------------Exon 1.6  PDB: D:83-118 (gaps)       Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.2a  PDB: D:34-82 UniProt: 58-106          ------------------------------------ Transcript 1 (2)
                 4cdc D   1 DTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYK----KVTTYCNETMTGWVHDVLGRNWACFTGKKV 118
                                    10        20        30        40        50        60        70        80   |    90       100       110        
                                                                                                              84   89

Chain E from PDB  Type:PROTEIN  Length:159
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:162
                                   239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389  
           CATC_HUMAN   230 HLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 391
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee....................hhhhhhhhhhhhhhhhhhh........hhhhhhhhh...hhh...hhhhhhhhhhhhh....hhhh............---....eeeeee........hhhhhhhhhhhhh.eeeee..hhhhhhh...ee... Sec.struct. author
             SAPs(SNPs) (1) ------Y------------F--L-------------------H-------------R----Y--H-----DS--N-------R------G-------------------CC------C-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------P---------------------------SV------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------THIOL_PROTEA-------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.8  PDB: E:206-229-------------------------------------------Exon 1.10b  PDB: E:273-367 (gaps) UniProt: 297-463 [INCOMPLETE]                                 Transcript 1 (1)
           Transcript 1 (2) -----------------------Exon 1.9c  PDB: E:229-273 UniProt: 253-297   ---------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4cdc E 206 HLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMK---FRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 367
                                   215       225       235       245       255       265       275       285       295       305    |  315       325       335       345       355       365  
                                                                                                                                  310 314

Chain F from PDB  Type:PROTEIN  Length:68
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:68
                                   405       415       425       435       445       455        
           CATC_HUMAN   396 PFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL 463
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeee......eeeeee...........eeeee...hhhhh....eeeee.... Sec.struct. author
             SAPs(SNPs) (1) -----K---N------C----------------C-----------------G-----V---------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------R---------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------THIOL_PROTE--------THIOL_PROTEASE_ASN  ---------------------- PROSITE
           Transcript 1 (1) Exon 1.10b  PDB: F:372-439 UniProt: 297-463 [INCOMPLETE]             Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------- Transcript 1 (2)
                 4cdc F 372 PFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL 439
                                   381       391       401       411       421       431

Chain G from PDB  Type:PROTEIN  Length:114
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:119
                                    34        44        54        64        74        84        94       104       114       124       134         
           CATC_HUMAN    25 DTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYKEEGSKVTTYCNETMTGWVHDVLGRNWACFTGKKVG 143
               SCOP domains d4cdcg_ G: Dipeptidyl peptidase I (cathepsin C), exclusion domain                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhheeeeeeeeeeee....hhhhh..eeeeeeeeee...eeee....eeeeeee...eeeeee..eeeeeeeee.-----..eeeeee............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------S---------------------------------------------------------------------------------------P-E---------R---- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: G:1-34            ------------------------------------------------Exon 1.6  PDB: G:83-119 (gaps)        Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.2a  PDB: G:34-82 UniProt: 58-106          ------------------------------------- Transcript 1 (2)
                 4cdc G   1 DTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYK-----VTTYCNETMTGWVHDVLGRNWACFTGKKVG 119
                                    10        20        30        40        50        60        70        80   |    90       100       110         
                                                                                                              84    90

Chain H from PDB  Type:PROTEIN  Length:162
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:162
                                   239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389  
           CATC_HUMAN   230 HLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 391
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee....................hhhhhhhhhhhhhhhhhhh........hhhhhhhhh...hhh...hhhhhhhhhhhhh....hhhh...................eeeeee........hhhhhhhhhhhhh.eeeee..hhhhhh....ee... Sec.struct. author
             SAPs(SNPs) (1) ------Y------------F--L-------------------H-------------R----Y--H-----DS--N-------R------G-------------------CC------C-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------P---------------------------SV------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------THIOL_PROTEA-------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.8  PDB: H:206-229-------------------------------------------Exon 1.10b  PDB: H:273-367 UniProt: 297-463 [INCOMPLETE]                                        Transcript 1 (1)
           Transcript 1 (2) -----------------------Exon 1.9c  PDB: H:229-273 UniProt: 253-297   ---------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4cdc H 206 HLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 367
                                   215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365

Chain I from PDB  Type:PROTEIN  Length:68
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:68
                                   405       415       425       435       445       455        
           CATC_HUMAN   396 PFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL 463
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeee......eeeeee...........eeeee...hhhhh....eeeee.... Sec.struct. author
             SAPs(SNPs) (1) -----K---N------C----------------C-----------------G-----V---------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------R---------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------THIOL_PROTE--------THIOL_PROTEASE_ASN  ---------------------- PROSITE
           Transcript 1 (1) Exon 1.10b  PDB: I:372-439 UniProt: 297-463 [INCOMPLETE]             Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------- Transcript 1 (2)
                 4cdc I 372 PFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL 439
                                   381       391       401       411       421       431

Chain J from PDB  Type:PROTEIN  Length:114
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:119
                                    34        44        54        64        74        84        94       104       114       124       134         
           CATC_HUMAN    25 DTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYKEEGSKVTTYCNETMTGWVHDVLGRNWACFTGKKVG 143
               SCOP domains d4cdcj_ J: Dipeptidyl peptidase I (cathepsin C), exclusion domain                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhheeeeeeeeeeee...........eeeeeeeeee...eee.....eeeeeee...eeeeee..eeeeeeeee.-----..eeeeee............eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------S---------------------------------------------------------------------------------------P-E---------R---- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: J:1-34            ------------------------------------------------Exon 1.6  PDB: J:83-119 (gaps)        Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.2a  PDB: J:34-82 UniProt: 58-106          ------------------------------------- Transcript 1 (2)
                 4cdc J   1 DTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYK-----VTTYCNETMTGWVHDVLGRNWACFTGKKVG 119
                                    10        20        30        40        50        60        70        80   |    90       100       110         
                                                                                                              84    90

Chain K from PDB  Type:PROTEIN  Length:162
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:162
                                   239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389  
           CATC_HUMAN   230 HLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 391
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee....................hhhhhhhhhhhhhhhhhhh........hhhhhhhhh...hhh...hhhhhhhhhhhhh..........................eeeeeee........hhhhhhhhhhhhh.eeeee..hhhhhhh...ee... Sec.struct. author
             SAPs(SNPs) (1) ------Y------------F--L-------------------H-------------R----Y--H-----DS--N-------R------G-------------------CC------C-------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------P---------------------------SV------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------THIOL_PROTEA-------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.8  PDB: K:206-229-------------------------------------------Exon 1.10b  PDB: K:273-367 UniProt: 297-463 [INCOMPLETE]                                        Transcript 1 (1)
           Transcript 1 (2) -----------------------Exon 1.9c  PDB: K:229-273 UniProt: 253-297   ---------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4cdc K 206 HLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 367
                                   215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365

Chain L from PDB  Type:PROTEIN  Length:68
 aligned with CATC_HUMAN | P53634 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:68
                                   405       415       425       435       445       455        
           CATC_HUMAN   396 PFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL 463
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeee......eeeeee...........eeeee...hhhhh....eeeeee... Sec.struct. author
             SAPs(SNPs) (1) -----K---N------C----------------C-----------------G-----V---------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------R---------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------THIOL_PROTE--------THIOL_PROTEASE_ASN  ---------------------- PROSITE
           Transcript 1 (1) Exon 1.10b  PDB: L:372-439 UniProt: 297-463 [INCOMPLETE]             Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------- Transcript 1 (2)
                 4cdc L 372 PFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPKL 439
                                   381       391       401       411       421       431

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 4CDC)

(no "Pfam Domain" information available for 4CDC)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (CATC_HUMAN | P53634)

molecular function
	GO:0051087	chaperone binding	Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport.
	GO:0031404	chloride ion binding	Interacting selectively and non-covalently with chloride ions (Cl-).
	GO:0004197	cysteine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
	GO:0008234	cysteine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016505	peptidase activator activity involved in apoptotic process	Increases the activity of a peptidase that is involved in the apoptotic process.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0019902	phosphatase binding	Interacting selectively and non-covalently with any phosphatase.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0043621	protein self-association	Interacting selectively and non-covalently with a domain within the same polypeptide.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0048208	COPII vesicle coating	The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.
	GO:0006888	ER to Golgi vesicle-mediated transport	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
	GO:0001913	T cell mediated cytotoxicity	The directed killing of a target cell by a T cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors.
	GO:0007568	aging	A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
	GO:0006915	apoptotic process	A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
	GO:0006955	immune response	Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
	GO:2001235	positive regulation of apoptotic signaling pathway	Any process that activates or increases the frequency, rate or extent of apoptotic signaling pathway.
	GO:1903052	positive regulation of proteolysis involved in cellular protein catabolic process	Any process that activates or increases the frequency, rate or extent of proteolysis involved in cellular protein catabolic process.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0051603	proteolysis involved in cellular protein catabolic process	The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
	GO:0010033	response to organic substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.
cellular component
	GO:0030134	COPII-coated ER to Golgi transport vesicle	A vesicle with a coat formed of the COPII coat complex proteins. The COPII coat complex is formed by the Sec23p/Sec24p and the Sec13p/Sec31p heterodimers. COPII-associated vesicles transport proteins from the rough endoplasmic reticulum to the Golgi apparatus (anterograde transport).
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005788	endoplasmic reticulum lumen	The volume enclosed by the membranes of the endoplasmic reticulum.
	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane	The lipid bilayer surrounding any of the compartments of the endoplasmic reticulum (ER)-Golgi intermediate compartment system.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005764	lysosome	A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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	4cdc
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	CATC_HUMAN \| P53634
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	3.4.14.1
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	CATC_HUMAN \| P53634	:	1k3b 2djf 2djg 3pdf 4cdd 4cde 4cdf 4oel 4oem

4cdd	HUMAN DPP1 IN COMPLEX WITH (2S)-N-((1S)-1-CYANO-2 -(4-(4-CYANOPHENYL)PHENYL)ETHYL)PIPERIDINE-2- CARBOXAMIDE
4cde	HUMAN DPP1 IN COMPLEX WITH 4-AMINO-N-((1S)-1-CYANO -2-(4-(4-CYANOPHENYL)PHENYL)ETHYL)TETRAHYDROPYRAN-4- CARBOXAMIDE
4cdf	HUMAN DPP1 IN COMPLEX WITH (2S,4S)-N-((1S)-1-CYANO -2-(4-(4-CYANOPHENYL)PHENYL)ETHYL)-4-HYDROXY- PIPERIDINE-2-CARBOXAMIDE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 19)

Sites (19, 19)

SS Bonds (19, 19)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (29, 116)

PROSITE Motifs (3, 12)

Exons (6, 28)

Sequences/Alignments

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SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (33, 33)

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