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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN DPP1 IN COMPLEX WITH (2S)-2-AMINO-N-((1S)-1-CYANO-2-(4 PHENYLPHENYL)ETHYL)BUTANAMIDE
Keywords HYDROLASE, INHIBITOR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4CDC     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN  A 114 913 0
2  Protein   DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN  B 162 1284 0
3  Protein   DIPEPTIDYL PEPTIDASE 1 LIGHT CHAIN  C 68 528 0
4  Protein   DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN  D 114 918 0
5  Protein   DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN  E 159 1261 0
6  Protein   DIPEPTIDYL PEPTIDASE 1 LIGHT CHAIN  F 68 528 0
7  Protein   DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN  G 114 913 0
8  Protein   DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN  H 162 1284 0
9  Protein   DIPEPTIDYL PEPTIDASE 1 LIGHT CHAIN  I 68 528 0
10  Protein   DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN  J 114 913 0
11  Protein   DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN  K 162 1284 0
12  Protein   DIPEPTIDYL PEPTIDASE 1 LIGHT CHAIN  L 68 528 0
13  Ligand   DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN  A 1 0 14
14  Ligand   DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN  B 3 0 38
15  Ligand   DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN  D 2 0 20
16  Ligand   DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN  E 2 0 24
17  Ligand   DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN  G 3 0 26
18  Ligand   DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN  H 3 0 38
19  Ligand   DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN  J 1 0 14
20  Ligand   DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN  K 4 0 44
21 Water     311 0 311
total       1703 10882 529
Proteins
Unit 1 ASP1 THR2 PRO3 ALA4 ASN5 CYS6 THR7 TYR8 LEU9 ASP10 LEU11 LEU12 GLY13 THR14 TRP15 VAL16 PHE17 GLN18 VAL19 GLY20 SER21 SER22 GLY23 SER24 GLN25 ARG26 ASP27 VAL28 ASN29 CYS30 SER31 VAL32 MET33 GLY34 PRO35 GLN36 GLU37 LYS38 LYS39 VAL40 VAL41 VAL42 TYR43 LEU44 GLN45 LYS46 LEU47 ASP48 THR49 ALA50 TYR51 ASP52 ASP53 LEU54 GLY55 ASN56 SER57 GLY58 HIS59 PHE60 THR61 ILE62 ILE63 TYR64 ASN65 GLN66 GLY67 PHE68 GLU69 ILE70 VAL71 LEU72 ASN73 ASP74 TYR75 LYS76 TRP77 PHE78 ALA79 PHE80 PHE81 LYS82 TYR83 LYS84 VAL90 THR91 THR92 TYR93 CYS94 ASN95 GLU96 THR97 MET98 THR99 GLY100 TRP101 VAL102 HIS103 ASP104 VAL105 LEU106 GLY107 ARG108 ASN109 TRP110 ALA111 CYS112 PHE113 THR114 GLY115 LYS116 LYS117 VAL118 GLY119
Unit 2 HIS206 LEU207 PRO208 THR209 SER210 TRP211 ASP212 TRP213 ARG214 ASN215 VAL216 HIS217 GLY218 ILE219 ASN220 PHE221 VAL222 SER223 PRO224 VAL225 ARG226 ASN227 GLN228 ALA229 SER230 CYS231 GLY232 SER233 CYS234 TYR235 SER236 PHE237 ALA238 SER239 MET240 GLY241 MET242 LEU243 GLU244 ALA245 ARG246 ILE247 ARG248 ILE249 LEU250 THR251 ASN252 ASN253 SER254 GLN255 THR256 PRO257 ILE258 LEU259 SER260 PRO261 GLN262 GLU263 VAL264 VAL265 SER266 CYS267 SER268 GLN269 TYR270 ALA271 GLN272 GLY273 CYS274 GLU275 GLY276 GLY277 PHE278 PRO279 TYR280 LEU281 ILE282 ALA283 GLY284 LYS285 TYR286 ALA287 GLN288 ASP289 PHE290 GLY291 LEU292 VAL293 GLU294 GLU295 ALA296 CYS297 PHE298 PRO299 TYR300 THR301 GLY302 THR303 ASP304 SER305 PRO306 CYS307 LYS308 MET309 LYS310 GLU311 ASP312 CYS313 PHE314 ARG315 TYR316 TYR317 SER318 SER319 GLU320 TYR321 HIS322 TYR323 VAL324 GLY325 GLY326 PHE327 TYR328 GLY329 GLY330 CYS331 ASN332 GLU333 ALA334 LEU335 MET336 LYS337 LEU338 GLU339 LEU340 VAL341 HIS342 HIS343 GLY344 PRO345 MET346 ALA347 VAL348 ALA349 PHE350 GLU351 VAL352 TYR353 ASP354 ASP355 PHE356 LEU357 HIS358 TYR359 LYS360 LYS361 GLY362 ILE363 TYR364 HIS365 HIS366 THR367
Unit 3 PRO372 PHE373 ASN374 PRO375 PHE376 GLU377 LEU378 THR379 ASN380 HIS381 ALA382 VAL383 LEU384 LEU385 VAL386 GLY387 TYR388 GLY389 THR390 ASP391 SER392 ALA393 SER394 GLY395 MET396 ASP397 TYR398 TRP399 ILE400 VAL401 LYS402 ASN403 SER404 TRP405 GLY406 THR407 GLY408 TRP409 GLY410 GLU411 ASN412 GLY413 TYR414 PHE415 ARG416 ILE417 ARG418 ARG419 GLY420 THR421 ASP422 GLU423 CYS424 ALA425 ILE426 GLU427 SER428 ILE429 ALA430 VAL431 ALA432 ALA433 THR434 PRO435 ILE436 PRO437 LYS438 LEU439
Unit 4 ASP1 THR2 PRO3 ALA4 ASN5 CYS6 THR7 TYR8 LEU9 ASP10 LEU11 LEU12 GLY13 THR14 TRP15 VAL16 PHE17 GLN18 VAL19 GLY20 SER21 SER22 GLY23 SER24 GLN25 ARG26 ASP27 VAL28 ASN29 CYS30 SER31 VAL32 MET33 GLY34 PRO35 GLN36 GLU37 LYS38 LYS39 VAL40 VAL41 VAL42 TYR43 LEU44 GLN45 LYS46 LEU47 ASP48 THR49 ALA50 TYR51 ASP52 ASP53 LEU54 GLY55 ASN56 SER57 GLY58 HIS59 PHE60 THR61 ILE62 ILE63 TYR64 ASN65 GLN66 GLY67 PHE68 GLU69 ILE70 VAL71 LEU72 ASN73 ASP74 TYR75 LYS76 TRP77 PHE78 ALA79 PHE80 PHE81 LYS82 TYR83 LYS84 LYS89 VAL90 THR91 THR92 TYR93 CYS94 ASN95 GLU96 THR97 MET98 THR99 GLY100 TRP101 VAL102 HIS103 ASP104 VAL105 LEU106 GLY107 ARG108 ASN109 TRP110 ALA111 CYS112 PHE113 THR114 GLY115 LYS116 LYS117 VAL118
Unit 5 HIS206 LEU207 PRO208 THR209 SER210 TRP211 ASP212 TRP213 ARG214 ASN215 VAL216 HIS217 GLY218 ILE219 ASN220 PHE221 VAL222 SER223 PRO224 VAL225 ARG226 ASN227 GLN228 ALA229 SER230 CYS231 GLY232 SER233 CYS234 TYR235 SER236 PHE237 ALA238 SER239 MET240 GLY241 MET242 LEU243 GLU244 ALA245 ARG246 ILE247 ARG248 ILE249 LEU250 THR251 ASN252 ASN253 SER254 GLN255 THR256 PRO257 ILE258 LEU259 SER260 PRO261 GLN262 GLU263 VAL264 VAL265 SER266 CYS267 SER268 GLN269 TYR270 ALA271 GLN272 GLY273 CYS274 GLU275 GLY276 GLY277 PHE278 PRO279 TYR280 LEU281 ILE282 ALA283 GLY284 LYS285 TYR286 ALA287 GLN288 ASP289 PHE290 GLY291 LEU292 VAL293 GLU294 GLU295 ALA296 CYS297 PHE298 PRO299 TYR300 THR301 GLY302 THR303 ASP304 SER305 PRO306 CYS307 LYS308 MET309 LYS310 PHE314 ARG315 TYR316 TYR317 SER318 SER319 GLU320 TYR321 HIS322 TYR323 VAL324 GLY325 GLY326 PHE327 TYR328 GLY329 GLY330 CYS331 ASN332 GLU333 ALA334 LEU335 MET336 LYS337 LEU338 GLU339 LEU340 VAL341 HIS342 HIS343 GLY344 PRO345 MET346 ALA347 VAL348 ALA349 PHE350 GLU351 VAL352 TYR353 ASP354 ASP355 PHE356 LEU357 HIS358 TYR359 LYS360 LYS361 GLY362 ILE363 TYR364 HIS365 HIS366 THR367
Unit 6 PRO372 PHE373 ASN374 PRO375 PHE376 GLU377 LEU378 THR379 ASN380 HIS381 ALA382 VAL383 LEU384 LEU385 VAL386 GLY387 TYR388 GLY389 THR390 ASP391 SER392 ALA393 SER394 GLY395 MET396 ASP397 TYR398 TRP399 ILE400 VAL401 LYS402 ASN403 SER404 TRP405 GLY406 THR407 GLY408 TRP409 GLY410 GLU411 ASN412 GLY413 TYR414 PHE415 ARG416 ILE417 ARG418 ARG419 GLY420 THR421 ASP422 GLU423 CYS424 ALA425 ILE426 GLU427 SER428 ILE429 ALA430 VAL431 ALA432 ALA433 THR434 PRO435 ILE436 PRO437 LYS438 LEU439
Unit 7 ASP1 THR2 PRO3 ALA4 ASN5 CYS6 THR7 TYR8 LEU9 ASP10 LEU11 LEU12 GLY13 THR14 TRP15 VAL16 PHE17 GLN18 VAL19 GLY20 SER21 SER22 GLY23 SER24 GLN25 ARG26 ASP27 VAL28 ASN29 CYS30 SER31 VAL32 MET33 GLY34 PRO35 GLN36 GLU37 LYS38 LYS39 VAL40 VAL41 VAL42 TYR43 LEU44 GLN45 LYS46 LEU47 ASP48 THR49 ALA50 TYR51 ASP52 ASP53 LEU54 GLY55 ASN56 SER57 GLY58 HIS59 PHE60 THR61 ILE62 ILE63 TYR64 ASN65 GLN66 GLY67 PHE68 GLU69 ILE70 VAL71 LEU72 ASN73 ASP74 TYR75 LYS76 TRP77 PHE78 ALA79 PHE80 PHE81 LYS82 TYR83 LYS84 VAL90 THR91 THR92 TYR93 CYS94 ASN95 GLU96 THR97 MET98 THR99 GLY100 TRP101 VAL102 HIS103 ASP104 VAL105 LEU106 GLY107 ARG108 ASN109 TRP110 ALA111 CYS112 PHE113 THR114 GLY115 LYS116 LYS117 VAL118 GLY119
Unit 8 HIS206 LEU207 PRO208 THR209 SER210 TRP211 ASP212 TRP213 ARG214 ASN215 VAL216 HIS217 GLY218 ILE219 ASN220 PHE221 VAL222 SER223 PRO224 VAL225 ARG226 ASN227 GLN228 ALA229 SER230 CYS231 GLY232 SER233 CYS234 TYR235 SER236 PHE237 ALA238 SER239 MET240 GLY241 MET242 LEU243 GLU244 ALA245 ARG246 ILE247 ARG248 ILE249 LEU250 THR251 ASN252 ASN253 SER254 GLN255 THR256 PRO257 ILE258 LEU259 SER260 PRO261 GLN262 GLU263 VAL264 VAL265 SER266 CYS267 SER268 GLN269 TYR270 ALA271 GLN272 GLY273 CYS274 GLU275 GLY276 GLY277 PHE278 PRO279 TYR280 LEU281 ILE282 ALA283 GLY284 LYS285 TYR286 ALA287 GLN288 ASP289 PHE290 GLY291 LEU292 VAL293 GLU294 GLU295 ALA296 CYS297 PHE298 PRO299 TYR300 THR301 GLY302 THR303 ASP304 SER305 PRO306 CYS307 LYS308 MET309 LYS310 GLU311 ASP312 CYS313 PHE314 ARG315 TYR316 TYR317 SER318 SER319 GLU320 TYR321 HIS322 TYR323 VAL324 GLY325 GLY326 PHE327 TYR328 GLY329 GLY330 CYS331 ASN332 GLU333 ALA334 LEU335 MET336 LYS337 LEU338 GLU339 LEU340 VAL341 HIS342 HIS343 GLY344 PRO345 MET346 ALA347 VAL348 ALA349 PHE350 GLU351 VAL352 TYR353 ASP354 ASP355 PHE356 LEU357 HIS358 TYR359 LYS360 LYS361 GLY362 ILE363 TYR364 HIS365 HIS366 THR367
Unit 9 PRO372 PHE373 ASN374 PRO375 PHE376 GLU377 LEU378 THR379 ASN380 HIS381 ALA382 VAL383 LEU384 LEU385 VAL386 GLY387 TYR388 GLY389 THR390 ASP391 SER392 ALA393 SER394 GLY395 MET396 ASP397 TYR398 TRP399 ILE400 VAL401 LYS402 ASN403 SER404 TRP405 GLY406 THR407 GLY408 TRP409 GLY410 GLU411 ASN412 GLY413 TYR414 PHE415 ARG416 ILE417 ARG418 ARG419 GLY420 THR421 ASP422 GLU423 CYS424 ALA425 ILE426 GLU427 SER428 ILE429 ALA430 VAL431 ALA432 ALA433 THR434 PRO435 ILE436 PRO437 LYS438 LEU439
Unit 10 ASP1 THR2 PRO3 ALA4 ASN5 CYS6 THR7 TYR8 LEU9 ASP10 LEU11 LEU12 GLY13 THR14 TRP15 VAL16 PHE17 GLN18 VAL19 GLY20 SER21 SER22 GLY23 SER24 GLN25 ARG26 ASP27 VAL28 ASN29 CYS30 SER31 VAL32 MET33 GLY34 PRO35 GLN36 GLU37 LYS38 LYS39 VAL40 VAL41 VAL42 TYR43 LEU44 GLN45 LYS46 LEU47 ASP48 THR49 ALA50 TYR51 ASP52 ASP53 LEU54 GLY55 ASN56 SER57 GLY58 HIS59 PHE60 THR61 ILE62 ILE63 TYR64 ASN65 GLN66 GLY67 PHE68 GLU69 ILE70 VAL71 LEU72 ASN73 ASP74 TYR75 LYS76 TRP77 PHE78 ALA79 PHE80 PHE81 LYS82 TYR83 LYS84 VAL90 THR91 THR92 TYR93 CYS94 ASN95 GLU96 THR97 MET98 THR99 GLY100 TRP101 VAL102 HIS103 ASP104 VAL105 LEU106 GLY107 ARG108 ASN109 TRP110 ALA111 CYS112 PHE113 THR114 GLY115 LYS116 LYS117 VAL118 GLY119
Unit 11 HIS206 LEU207 PRO208 THR209 SER210 TRP211 ASP212 TRP213 ARG214 ASN215 VAL216 HIS217 GLY218 ILE219 ASN220 PHE221 VAL222 SER223 PRO224 VAL225 ARG226 ASN227 GLN228 ALA229 SER230 CYS231 GLY232 SER233 CYS234 TYR235 SER236 PHE237 ALA238 SER239 MET240 GLY241 MET242 LEU243 GLU244 ALA245 ARG246 ILE247 ARG248 ILE249 LEU250 THR251 ASN252 ASN253 SER254 GLN255 THR256 PRO257 ILE258 LEU259 SER260 PRO261 GLN262 GLU263 VAL264 VAL265 SER266 CYS267 SER268 GLN269 TYR270 ALA271 GLN272 GLY273 CYS274 GLU275 GLY276 GLY277 PHE278 PRO279 TYR280 LEU281 ILE282 ALA283 GLY284 LYS285 TYR286 ALA287 GLN288 ASP289 PHE290 GLY291 LEU292 VAL293 GLU294 GLU295 ALA296 CYS297 PHE298 PRO299 TYR300 THR301 GLY302 THR303 ASP304 SER305 PRO306 CYS307 LYS308 MET309 LYS310 GLU311 ASP312 CYS313 PHE314 ARG315 TYR316 TYR317 SER318 SER319 GLU320 TYR321 HIS322 TYR323 VAL324 GLY325 GLY326 PHE327 TYR328 GLY329 GLY330 CYS331 ASN332 GLU333 ALA334 LEU335 MET336 LYS337 LEU338 GLU339 LEU340 VAL341 HIS342 HIS343 GLY344 PRO345 MET346 ALA347 VAL348 ALA349 PHE350 GLU351 VAL352 TYR353 ASP354 ASP355 PHE356 LEU357 HIS358 TYR359 LYS360 LYS361 GLY362 ILE363 TYR364 HIS365 HIS366 THR367
Unit 12 PRO372 PHE373 ASN374 PRO375 PHE376 GLU377 LEU378 THR379 ASN380 HIS381 ALA382 VAL383 LEU384 LEU385 VAL386 GLY387 TYR388 GLY389 THR390 ASP391 SER392 ALA393 SER394 GLY395 MET396 ASP397 TYR398 TRP399 ILE400 VAL401 LYS402 ASN403 SER404 TRP405 GLY406 THR407 GLY408 TRP409 GLY410 GLU411 ASN412 GLY413 TYR414 PHE415 ARG416 ILE417 ARG418 ARG419 GLY420 THR421 ASP422 GLU423 CYS424 ALA425 ILE426 GLU427 SER428 ILE429 ALA430 VAL431 ALA432 ALA433 THR434 PRO435 ILE436 PRO437 LYS438 LEU439
Ligands
Unit 13 NAG1120
Unit 14 6AO1368 NAG1369 CL1370
Unit 15 NAG1119 GOL1120
Unit 16 6AO1368 CL1369
Unit 17 NAG1120 GOL1121 GOL1122
Unit 18 6AO1368 NAG1369 CL1370
Unit 19 NAG1120
Unit 20 6AO1368 NAG1369 GOL1370 CL1371
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany