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(-) Description

Title :  L-FUCULOSE 1-PHOSPHATE ALDOLASE
 
Authors :  M. A. Higgins, M. D. L. Suits, C. Marsters, A. B. Boraston
Date :  16 Aug 13  (Deposition) - 18 Dec 13  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Lyase, Fucose Processing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Higgins, M. D. Suits, C. Marsters, A. B. Boraston
Structural And Functional Analysis Of Fucose-Processing Enzymes From Streptococcus Pneumoniae.
J. Mol. Biol. V. 426 1469 2014
PubMed-ID: 24333485  |  Reference-DOI: 10.1016/J.JMB.2013.12.006

(-) Compounds

Molecule 1 - L-FUCULOSE PHOSPHATE ALDOLASE
    Chains: A
    EC Number: 4.1.2.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Common: PNEUMONOCOCCUS
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4
    Synonym: L-FUCULOSE 1-PHOSPHATE ALDOLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 8)

Asymmetric Unit (6, 8)
No.NameCountTypeFull Name
113P1Ligand/Ion1,3-DIHYDROXYACETONEPHOSPHATE
2EDO3Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4NI1Ligand/IonNICKEL (II) ION
5SO41Ligand/IonSULFATE ION
6ZN1Ligand/IonZINC ION
Biological Unit 1 (4, 24)
No.NameCountTypeFull Name
113P4Ligand/Ion1,3-DIHYDROXYACETONEPHOSPHATE
2EDO12Ligand/Ion1,2-ETHANEDIOL
3GOL4Ligand/IonGLYCEROL
4NI-1Ligand/IonNICKEL (II) ION
5SO44Ligand/IonSULFATE ION
6ZN-1Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:25 , HIS A:93 , HIS A:95 , TYR A:114 , HIS A:155 , 13P A:303BINDING SITE FOR RESIDUE ZN A 301
2AC2SOFTWAREGLY A:-4 , SER A:-3 , HIS A:-2BINDING SITE FOR RESIDUE NI A 302
3AC3SOFTWAREGLY A:25 , GLY A:26 , ASN A:27 , SER A:43 , GLY A:44 , SER A:72 , SER A:73 , GLU A:74 , HIS A:93 , HIS A:95 , TYR A:114 , HIS A:155 , ZN A:301 , HOH A:2021 , HOH A:2101BINDING SITE FOR RESIDUE 13P A 303
4AC4SOFTWAREGLY A:25 , GLY A:26 , ASN A:27 , SER A:43 , GLY A:44 , SER A:72 , SER A:73 , HOH A:2021BINDING SITE FOR RESIDUE SO4 A 304
5AC5SOFTWAREARG A:147BINDING SITE FOR RESIDUE EDO A 305
6AC6SOFTWARETHR A:84 , ARG A:85 , ASP A:86BINDING SITE FOR RESIDUE EDO A 306
7AC7SOFTWAREASN A:63 , VAL A:64 , THR A:84 , HOH A:2078BINDING SITE FOR RESIDUE EDO A 307
8AC8SOFTWARETHR A:133 , LYS A:134 , GLU A:135 , HOH A:2075BINDING SITE FOR RESIDUE GOL A 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4C25)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4C25)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4C25)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4C25)

(-) Exons   (0, 0)

(no "Exon" information available for 4C25)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
 aligned with A0A0H2US48_S | A0A0H2US48 from UniProtKB/TrEMBL  Length:212

    Alignment length:212
                                 1                                                                                                                                                                                                              
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205  
         A0A0H2US48_S     - -----MSDVKQELIKYGKKLVETDLTKGTGGNLSVFDREKQLMAITPSGIDFFEIKESDIVVMDINGNVVEGERLPSSEWYMHLIQYQTRDDIDAIIHAHTTYATVLACLREPLPASHYMIAVAGKDVRVAEYATYGTKELAVNAAKAMEGRRAVLLANHGILAGAQNLLNAFNIVEEVEYCAKIYCLAKNFGEPVVLPDEEMELMAEKFKT 207
               SCOP domains d4c25a_ A: automated matches                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh........eeeeee....eeee.....hhhhhhhhhheeee....eee.......hhhhhhhhhhhh....eeeee..hhhhhhhhhh......hhhhhhh....eee......hhhhhhhhhhhh....eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c25 A  -4 GSHMASSDVKQELIKYGKKLVETDLTKGTGGNLSVFDREKQLMAITPSGIDFFEIKESDIVVMDINGNVVEGERLPSSEWYMHLIQYQTRDDIDAIIHAHTTYATVLACLREPLPASHYMIAVAGKDVRVAEYATYGTKELAVNAAKAMEGRRAVLLANHGILAGAQNLLNAFNIVEEVEYCAKIYCLAKNFGEPVVLPDEEMELMAEKFKF 207
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4C25)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4C25)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4C25)

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  4c25
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  4.1.2.17
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H2US48_S | A0A0H2US48: 4c24

(-) Related Entries Specified in the PDB File

4c20 L-FUCOSE ISOMERASE
4c21 L-FUCOSE ISOMERASE IN COMPLEX WITH FUCITOL
4c22 L-FUCOSE ISOMERASE IN COMPLEX WITH FUCULOSE
4c23 L-FUCULOSE KINASE
4c24 L-FUCULOSE 1-PHOSPHATE ALDOLASE