4C24 - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   L-FUCULOSE 1-PHOSPHATE ALDOLASE

Authors :   M. A. Higgins, M. D. L. Suits, C. Marsters, A. B. Boraston

Date :   16 Aug 13 (Deposition) - 11 Dec 13 (Release) - 19 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Lyase, Fucose Processing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Higgins, M. D. Suits, C. Marsters, A. B. Boraston
Structural And Functional Analysis Of Fucose-Processing Enzymes From Streptococcus Pneumoniae.
J. Mol. Biol. V. 426 1469 2014
PubMed-ID: 24333485 | Reference-DOI: 10.1016/J.JMB.2013.12.006

Molecule 1 - L-FUCULOSE PHOSPHATE ALDOLASE
	Chains	:	A
	EC Number	:	4.1.2.17
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET28
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	170187
	Strain	:	TIGR4
	Synonym	:	L-FUCULOSE 1-PHOSPHATE ALDOLASE

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 6)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	1	Ligand/Ion	GLYCEROL
3	NI	1	Ligand/Ion	NICKEL (II) ION
4	SO4	2	Ligand/Ion	SULFATE ION
5	ZN	1	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 16)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	4	Ligand/Ion	GLYCEROL
3	NI	-1	Ligand/Ion	NICKEL (II) ION
4	SO4	8	Ligand/Ion	SULFATE ION
5	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:25 , HIS A:93 , HIS A:95 , TYR A:114 , HIS A:155 , HOH A:2018	BINDING SITE FOR RESIDUE ZN A 301
2	AC2	SOFTWARE	GLY A:-4 , HIS A:-2 , SER A:-3	BINDING SITE FOR RESIDUE NI A 302
3	AC3	SOFTWARE	THR A:97 , TYR A:98 , LYS A:179 , HOH A:2048 , HOH A:2084	BINDING SITE FOR RESIDUE SO4 A1207
4	AC4	SOFTWARE	GLY A:25 , GLY A:26 , ASN A:27 , SER A:43 , GLY A:44 , SER A:72 , SER A:73 , HOH A:2017 , HOH A:2019	BINDING SITE FOR RESIDUE SO4 A1208
5	AC5	SOFTWARE	LYS A:121 , ARG A:124 , ARG A:147	BINDING SITE FOR RESIDUE EDO A1209
6	AC6	SOFTWARE	THR A:133 , LYS A:134 , GLU A:135 , HOH A:2100 , HOH A:2101	BINDING SITE FOR RESIDUE GOL A1210

(no "SS Bond" information available for 4C24)

(no "Cis Peptide Bond" information available for 4C24)

(no "SAP(SNP)/Variant" information available for 4C24)

(no "PROSITE Motif" information available for 4C24)

(no "Exon" information available for 4C24)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:211
 aligned with A0A0H2US48_S | A0A0H2US48 from UniProtKB/TrEMBL  Length:212

    Alignment length:211
                                 1                                                                                                                                                                                                             
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205 
         A0A0H2US48_S     - -----MSDVKQELIKYGKKLVETDLTKGTGGNLSVFDREKQLMAITPSGIDFFEIKESDIVVMDINGNVVEGERLPSSEWYMHLIQYQTRDDIDAIIHAHTTYATVLACLREPLPASHYMIAVAGKDVRVAEYATYGTKELAVNAAKAMEGRRAVLLANHGILAGAQNLLNAFNIVEEVEYCAKIYCLAKNFGEPVVLPDEEMELMAEKFK 206
               SCOP domains d4c24a_ A: automated matches                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh........eeeeee....eeee.....hhhhhhhhhheeee....eee.......hhhhhhhhhhhh....eeeee..hhhhhhhhhh......hhhhhhh.....ee......hhhhhhhhhhhhh...eeee...eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c24 A  -4 GSHMASSDVKQELIKYGKKLVETDLTKGTGGNLSVFDREKQLMAITPSGIDFFEIKESDIVVMDINGNVVEGERLPSSEWYMHLIQYQTRDDIDAIIHAHTTYATVLACLREPLPASHYMIAVAGKDVRVAEYATYGTKELAVNAAKAMEGRRAVLLANHGILAGAQNLLNAFNIVEEVEYCAKIYCLAKNFGEPVVLPDEEMELMAEKFK 206
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: AraD/HMP-PK domain-like (40)

Superfamily: AraD/HMP-PK domain-like (40)

Family: automated matches (3)

Protein domain: automated matches (3)

Streptococcus pneumoniae [TaxId: 170187] (2)

d4c24a_

(no "CATH Domain" information available for 4C24)

(no "Pfam Domain" information available for 4C24)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 4C24)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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		NI	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ZN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4c24)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	4c24
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	A0A0H2US48_S \| A0A0H2US48
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	4.1.2.17
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		Interatomic Contacts of Structural Units	:	CSU
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UniProtKB/TrEMBL
	A0A0H2US48_S \| A0A0H2US48	:	4c25

4c20	L-FUCOSE ISOMERASE
4c21	L-FUCOSE ISOMERASE IN COMPLEX WITH FUCITOL
4c22	L-FUCOSE ISOMERASE IN COMPLEX WITH FUCULOSE
4c23	L-FUCULOSE KINASE
4c25	L-FUCULOSE 1-PHOSPHATE ALDOLASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (1, 1)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File