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(-) Description

Title :  CRYSTAL STRUCTURE OF TAMA FROM E. COLI
 
Authors :  F. Gruss, F. Zaehringer, R. P. Jakob, B. M. Burmann, S. Hiller, T. Maier
Date :  30 Jul 13  (Deposition) - 25 Sep 13  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Transport Protein, Ytfm, Polypeptide Transport-Associated, Autotransporter Biogenesis, Autotransporter Assembly, Outer Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Gruss, F. Zaehringer, R. P. Jakob, B. M. Burmann, S. Hiller, T. Maier
The Structural Basis Of Autotransporter Translocation By Tama
Nat. Struct. Mol. Biol. V. 20 1318 2013
PubMed-ID: 24056943  |  Reference-DOI: 10.1038/NSMB.2689

(-) Compounds

Molecule 1 - TRANSLOCATION AND ASSEMBLY MODULE TAMA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: OMP3
    Expression System Vector: PET22B
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 22-577
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: AUTOTRANSPORTER ASSEMBLY FACTOR TAMA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 21)

Asymmetric/Biological Unit (3, 21)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL3Ligand/IonCHLORIDE ION
3MC316Ligand/Ion1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:282 , ALA A:284 , ILE A:304 , SER A:305 , ALA A:306 , GLN A:309 , LEU A:311 , ARG A:442 , HIS A:443 , TYR A:506 , TYR A:508 , MC3 A:608 , MC3 A:611 , HOH A:2221BINDING SITE FOR RESIDUE MC3 A 601
02AC2SOFTWAREASN A:292 , SER A:293 , TYR A:294 , TYR A:315 , GLN A:331 , GLY A:332 , MC3 A:611 , MC3 A:613BINDING SITE FOR RESIDUE MC3 A 602
03AC3SOFTWAREASN A:433 , THR A:447 , ARG A:448 , GLY A:449 , ILE A:500 , SER A:503 , SER A:522 , PHE A:534 , THR A:536 , MC3 A:616BINDING SITE FOR RESIDUE MC3 A 603
04AC4SOFTWAREPHE A:334 , ARG A:336BINDING SITE FOR RESIDUE MC3 A 604
05AC5SOFTWARETRP A:514 , TRP A:544BINDING SITE FOR RESIDUE MC3 A 605
06AC6SOFTWARETHR A:270 , VAL A:272 , LEU A:573 , MC3 A:608BINDING SITE FOR RESIDUE MC3 A 606
07AC7SOFTWARESER A:359 , TRP A:361 , ARG A:363BINDING SITE FOR RESIDUE MC3 A 607
08AC8SOFTWARETYR A:440 , HIS A:443 , TYR A:506 , MC3 A:601 , MC3 A:606BINDING SITE FOR RESIDUE MC3 A 608
09AC9SOFTWAREMC3 A:612 , MC3 A:615BINDING SITE FOR RESIDUE MC3 A 609
10BC1SOFTWAREMET A:384 , TRP A:420 , GLY A:421 , MC3 A:614BINDING SITE FOR RESIDUE MC3 A 610
11BC2SOFTWAREGLU A:265 , TRP A:286 , LYS A:288 , TRP A:290 , MET A:291 , LEU A:298 , GLY A:516 , LEU A:567 , MC3 A:601 , MC3 A:602 , HOH A:2070 , HOH A:2220BINDING SITE FOR RESIDUE MC3 A 611
12BC3SOFTWAREGLU A:325 , TRP A:355 , LEU A:357 , ARG A:363 , VAL A:390 , MC3 A:609BINDING SITE FOR RESIDUE MC3 A 612
13BC4SOFTWARETYR A:294 , HIS A:296 , TRP A:453 , LYS A:498 , SER A:527 , ASP A:528 , ILE A:529 , ARG A:530 , MC3 A:602BINDING SITE FOR RESIDUE MC3 A 613
14BC5SOFTWAREARG A:396 , TRP A:405 , ARG A:437 , MC3 A:610BINDING SITE FOR RESIDUE MC3 A 614
15BC6SOFTWARETYR A:328 , ARG A:353 , ILE A:529 , ARG A:530 , SER A:532 , MC3 A:609 , CL A:802BINDING SITE FOR RESIDUE MC3 A 615
16BC7SOFTWAREARG A:394 , GLN A:409 , MC3 A:603BINDING SITE FOR RESIDUE MC3 A 616
17BC8SOFTWAREARG A:228 , LEU A:324 , LEU A:357 , SER A:358 , HOH A:2101BINDING SITE FOR RESIDUE ACT A 701
18BC9SOFTWARESER A:297 , THR A:299 , SER A:314BINDING SITE FOR RESIDUE ACT A 702
19CC1SOFTWAREASP A:460 , ARG A:467 , TYR A:488BINDING SITE FOR RESIDUE CL A 801
20CC2SOFTWARELEU A:319 , LEU A:320 , ARG A:530 , MC3 A:615 , HOH A:2040BINDING SITE FOR RESIDUE CL A 802
21CC3SOFTWAREARG A:368 , HOH A:2128BINDING SITE FOR RESIDUE CL A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4C00)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4C00)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4C00)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1POTRAPS51779 POTRA domain profile.TAMA_ECOLI187-263  1A:187-263

(-) Exons   (0, 0)

(no "Exon" information available for 4C00)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:544
 aligned with TAMA_ECOLI | P0ADE4 from UniProtKB/Swiss-Prot  Length:577

    Alignment length:553
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574   
           TAMA_ECOLI    25 RLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGVPVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFDSEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSRGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHGLQFYIGLGPEL 577
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhh............hhhhhhhhhhhhhhh......eeeee.---------.eeeeee.....eeeeeeeeeehhhhh.hhhhhhhh..........hhhhhhhhhhhhhhhhhh.....eeeeeeeeee....eeeeeeeee........eeeee.....hhhhhh...........hhhhhhhhhhhhhh..eeeeeeee.hhhh.......eeeeeee....eeeeeeeeee...eeeeeeeee........eeeeeeeee..eeeeeeeeeee.......eeeeeeeeeeeeee..eeeeeeeeeeeeeeee...eeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeee.........eeeeeeeeeeeeee..eeeeeeeeeeeeeee........................................eeeeeeeeeeeeeee..eeeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeeee.........eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------POTRA  PDB: A:187-263 UniProt: 187-263                                       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c00 A  25 RLQVEGLSGQLEKNVRAQLSTIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDL---------VLIAKVTPGVPVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFDSEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEYESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYSTDVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMISRTRSRGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQYNVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHGLQFYIGLGPEL 577
                                    34        44        54        64        74        |-        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574   
                                                                                     83        93
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4C00)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4C00)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4C00)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (TAMA_ECOLI | P0ADE4)
biological process
    GO:0009306    protein secretion    The controlled release of proteins from a cell.
cellular component
    GO:0097347    TAM protein secretion complex    A heterooligomeric protein complex that spans the bacterial periplasm and enables the secretion of adhesin proteins in Gram-negative bacteria. In Citrobacter rodentium, Salmonella enterica and Escherichia coli, the TAM complex consists of an Omp85-family protein, TamA, in the outer membrane and TamB in the inner membrane.
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0045203    integral component of cell outer membrane    The component of the cell outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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  4c00
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  TAMA_ECOLI | P0ADE4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TAMA_ECOLI | P0ADE4: 2ly3 4bza

(-) Related Entries Specified in the PDB File

4bza CRYSTAL STRUCTURE OF TAMA POTRA DOMAINS 1-3 FROM E. COLI