4B7B - JenaLib

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:27 , GLN A:106 , THR A:107 , GLY A:108 , THR A:109 , GLY A:110 , LYS A:111 , THR A:112 , PHE A:113 , GLU A:118 , CD A:1372 , CL A:1378 , HOH A:2007 , HOH A:2016 , HOH A:2182 , HOH A:2184 , HOH A:2185	BINDING SITE FOR RESIDUE ADP A1364
02	AC2	SOFTWARE	HIS A:354 , CL A:1375 , HOH A:2177 , HOH A:2178	BINDING SITE FOR RESIDUE CD A1365
03	AC3	SOFTWARE	CYS A:25 , VAL A:41 , CYS A:43 , CD A:1367 , CL A:1374 , CL A:1376 , HOH A:2012 , HOH A:2025	BINDING SITE FOR RESIDUE CD A1366
04	AC4	SOFTWARE	CYS A:25 , ARG A:26 , CD A:1366 , CL A:1376 , CA A:1388 , HOH A:2011	BINDING SITE FOR RESIDUE CD A1367
05	AC5	SOFTWARE	CYS A:87 , ASP A:91 , HIS A:308 , CO A:1383 , HOH A:2049 , HOH A:2050	BINDING SITE FOR RESIDUE CD A1368
06	AC6	SOFTWARE	GLU A:145 , ASP A:149 , CO A:1385 , CO A:1386 , HOH A:2092 , HOH A:2093	BINDING SITE FOR RESIDUE CD A1369
07	AC7	SOFTWARE	LEU A:57 , HIS A:141 , ASP A:208 , HOH A:2083 , HOH A:2086	BINDING SITE FOR RESIDUE CD A1370
08	AC8	SOFTWARE	CYS A:87 , GLU A:313 , CL A:1379 , CL A:1380	BINDING SITE FOR RESIDUE CD A1371
09	AC9	SOFTWARE	THR A:112 , ADP A:1364 , HOH A:2072 , HOH A:2184 , HOH A:2185	BINDING SITE FOR RESIDUE CD A1372
10	BC1	SOFTWARE	THR A:203 , HIS A:205 , GLU A:209 , CL A:1381 , CL A:1382	BINDING SITE FOR RESIDUE CD A1373
11	BC2	SOFTWARE	VAL A:41 , CYS A:43 , CD A:1366 , HOH A:2025	BINDING SITE FOR RESIDUE CL A1374
12	BC3	SOFTWARE	HIS A:354 , CD A:1365 , HOH A:2030 , HOH A:2177	BINDING SITE FOR RESIDUE CL A1375
13	BC4	SOFTWARE	GLY A:73 , ALA A:74 , CD A:1366 , CD A:1367	BINDING SITE FOR RESIDUE CL A1376
14	BC5	SOFTWARE	ASP A:59 , SER A:61 , GLU A:145 , CO A:1385 , HOH A:2193	BINDING SITE FOR RESIDUE CL A1377
15	BC6	SOFTWARE	THR A:76 , ADP A:1364 , HOH A:2008	BINDING SITE FOR RESIDUE CL A1378
16	BC7	SOFTWARE	TYR A:82 , ARG A:83 , GLN A:142 , GLU A:313 , CD A:1371	BINDING SITE FOR RESIDUE CL A1379
17	BC8	SOFTWARE	ARG A:297 , HIS A:308 , GLU A:313 , CD A:1371	BINDING SITE FOR RESIDUE CL A1380
18	BC9	SOFTWARE	HIS A:205 , GLU A:209 , GLU A:344 , CD A:1373 , CL A:1391 , HOH A:2187	BINDING SITE FOR RESIDUE CL A1381
19	CC1	SOFTWARE	THR A:203 , GLU A:209 , CD A:1373 , HOH A:2119 , HOH A:2187	BINDING SITE FOR RESIDUE CL A1382
20	CC2	SOFTWARE	ASP A:91 , LYS A:146 , PRO A:310 , GLU A:313 , CD A:1368 , HOH A:2050	BINDING SITE FOR RESIDUE CO A1383
21	CC3	SOFTWARE	ASP A:186 , GLU A:247 , HOH A:2138 , HOH A:2189	BINDING SITE FOR RESIDUE CO A1384
22	CC4	SOFTWARE	ASP A:59 , GLU A:145 , CD A:1369 , CL A:1377 , HOH A:2190	BINDING SITE FOR RESIDUE CO A1385
23	CC5	SOFTWARE	GLU A:145 , ASP A:149 , CD A:1369 , HOH A:2093 , HOH A:2094 , HOH A:2095	BINDING SITE FOR RESIDUE CO A1386
24	CC6	SOFTWARE	GLU A:166 , SER A:291 , HOH A:2106 , HOH A:2158 , HOH A:2159	BINDING SITE FOR RESIDUE CO A1387
25	CC7	SOFTWARE	ARG A:26 , PHE A:28 , ASP A:251 , PRO A:338 , CD A:1367 , HOH A:2021	BINDING SITE FOR RESIDUE CA A1388
26	CC8	SOFTWARE	HIS A:38 , ASP A:251 , HOH A:2113 , HOH A:2192	BINDING SITE FOR RESIDUE CD A1389
27	CC9	SOFTWARE	GLU A:145 , HOH A:2193	BINDING SITE FOR RESIDUE CD A1390
28	DC1	SOFTWARE	GLU A:345 , CL A:1381 , HOH A:2052 , HOH A:2127 , HOH A:2172 , HOH A:2173 , HOH A:2187	BINDING SITE FOR RESIDUE CL A1391

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (3, 3)

PROSITE Motifs (2, 2)

Exons (9, 9)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:329
 aligned with KIF11_HUMAN | P52732 from UniProtKB/Swiss-Prot  Length:1056

    Alignment length:348
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355        
          KIF11_HUMAN    16 GKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 363
               SCOP domains d4b7ba_ A: automated matches                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee...hhhhhhh.....eeee....eeeee.........eeeee..eee....hhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhh...----.....hhhh.hhhhhhhhhhhhhhhhh..eeeeeeeeeeee..eeee.......-....eeeee..eeeeeeee....eee...hhhhhhhhhhhhhhhhhh.....hhhhheeeeeeeeeeeee.....eeeeeeeeeeee.......--------------.hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------L-----------------------------------------------------------------------------------------CC-------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --KINESIN_MOTOR_2  PDB: A:18-359 UniProt: 18-359                                                                                                                                                                                                                                                                                                        ---- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KINESIN_MOTO--------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1   --------------------------------------------Exon 1.3  PDB: A:71-103          --------------------------Exon 1.5  PDB: A:130-191 (gaps) UniProt: 130-191              Exon 1.6  PDB: A:192-233 UniProt: 192-233 ------------------------------Exon 1.8  PDB: A:264-344 (gaps) UniProt: 264-344                                 Exon 1.9            Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.2  PDB: A:26-70 UniProt: 26-70        --------------------------------Exon 1.4 UniProt: 103-129  -------------------------------------------------------------------------------------------------------Exon 1.7  PDB: A:233-263       ---------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4b7b A  16 GKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER----EYTWEEVPLDGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD-SERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENI--------------NINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 363
                                    25        35        45        55        65        75        85        95       105       115   |   125       135       145       155       165       175 | |   185       195       205       215       225       235       245       255       265      |  -         - |     295       305       315       325       335       345       355        
                                                                                                                                 119  124                                                  177 |                                                                                          272            287                                                                            
                                                                                                                                                                                             179

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (KIF11_HUMAN | P52732)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0008574	ATP-dependent microtubule motor activity, plus-end-directed	Catalysis of movement along a microtubule toward the plus end, coupled to the hydrolysis of ATP.
	GO:0008017	microtubule binding	Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
	GO:0003777	microtubule motor activity	Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP).
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0032403	protein complex binding	Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0019901	protein kinase binding	Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
biological process
	GO:0019886	antigen processing and presentation of exogenous peptide antigen via MHC class II	The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0007059	chromosome segregation	The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
	GO:0007018	microtubule-based movement	A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.
	GO:0007100	mitotic centrosome separation	Separation of duplicated centrosome components at the beginning of mitosis. The centriole pair within each centrosome becomes part of a separate microtubule organizing center that nucleates a radial array of microtubules called an aster. The two asters move to opposite sides of the nucleus to form the two poles of the mitotic spindle.
	GO:0090307	mitotic spindle assembly	The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of mitosis.
	GO:0007052	mitotic spindle organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle.
	GO:0046602	regulation of mitotic centrosome separation	Any process that modulates the frequency, rate or extent of the separation of duplicated centrosome components at the beginning of mitosis.
	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.
	GO:0051225	spindle assembly	The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart.
	GO:0007051	spindle organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the spindle, the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005871	kinesin complex	Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005874	microtubule	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
	GO:0005819	spindle	The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.
	GO:0005876	spindle microtubule	Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.
	GO:0000922	spindle pole	Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.

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	Cis Peptide Bonds
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1ii6	CRYSTAL STRUCTURE OF THE MITOTIC KINESIN EG5 IN COMPLEXWITH MG-ADP.
1q0b	CRYSTAL STRUCTURE OF THE MOTOR PROTEIN KSP IN COMPLEX WITHADP AND MONASTROL
1x88	HUMAN EG5 MOTOR DOMAIN BOUND TO MG-ADP AND MONASTROL
1yrs	CRYSTAL STRUCTURE OF KSP IN COMPLEX WITH INHIBITOR 1
2fky	CRYSTAL STRUCTURE OF KSP IN COMPLEX WITH INHIBITOR 13
2fl2	CRYSTAL STRUCTURE OF KSP IN COMPLEX WITH INHIBITOR 19
2fl6	CRYSTAL STRUCTURE OF KSP IN COMPLEX WITH INHIBITOR 6
2g1q	CRYSTAL STRUCTURE OF KSP IN COMPLEX WITH INHIBITOR 9H
2gm1	CRYSTAL STRUCTURE OF THE MITOTIC KINESIN EG5 IN COMPLEXWITH MG-ADP AND N-(3-AMINOPROPYL)-N-((3- BENZYL-5-CHLORO-4-OXO-3,4-DIHYDROPYRROLO[2,1-F][ 1,2,4]TRIAZIN-2-YL)(CYCLOPROPYL)METHYL)-4- METHYLBENZAMIDE
2uyi	CRYSTAL STRUCTURE OF KSP IN COMPLEX WITH ADP AND THIOPHENE CONTAINING INHIBITOR 33
2uym	CRYSTAL STRUCTURE OF KSP IN COMPLEX WITH ADP AND THIOPHENE CONTAINING INHIBITOR 37
2wog	INTERMEDIATE AND FINAL STATES OF HUMAN KINESIN EG5 IN COMPLEX WITH S-TRITYL-L-CYSTEINE
2x2r	CRYSTAL STRUCTURE OF HUMAN KINESIN EG5 IN COMPLEX WITH (R)-2-AMINO-3-((4-CHLOROPHENYL)DIPHENYLMETHYLTHIO) PROPANOIC ACID
2x7c	CRYSTAL STRUCTURE OF HUMAN KINESIN EG5 IN COMPLEX WITH (S)-ENASTRON
2x7d	CRYSTAL STRUCTURE OF HUMAN KINESIN EG5 IN COMPLEX WITH (S)-DIMETHYLENASTRON
2x7e	CRYSTAL STRUCTURE OF HUMAN KINESIN EG5 IN COMPLEX WITH (R)-FLUORASTROL
2xae	CRYSTAL STRUCTURE OF HUMAN KINESIN EG5 IN COMPLEX WITH (R)-2-AMINO-3-((S)-2-METHYL-1,1-DIPHENYLBUTYLTHIO )PROPANOIC ACID
4a1z	EG5-1
4a28	EG5-2
4a2t	EG5
4a50	EG5-INHIBITOR COMPLEX
4a51	EG5-INHIBITOR COMPLEX
4a5y	EG5-INHIBITOR COMPLEX
4ap0	THE MITOTIC KINESIN EG5 IN COMPLEX WITH MG-ADP AND ISPINESIB
4aqv	MODEL OF HUMAN KINESIN-5 MOTOR DOMAIN (3HQD) AND MAMMALIAN TUBULIN HETERODIMER (1JFF) DOCKED INTO THE 9. 7-ANGSTROM CRYO-EM MAP OF MICROTUBULE-BOUND KINESIN- 5 MOTOR DOMAIN IN THE AMPPPNP STATE.
4aqw	MODEL OF HUMAN KINESIN-5 MOTOR DOMAIN (1II6, 3HQD) AND MAMMALIAN TUBULIN HETERODIMER (1JFF) DOCKED INTO THE 9.5-ANGSTROM CRYO-EM MAP OF MICROTUBULE-BOUND KINESIN-5 MOTOR DOMAIN IN THE RIGOR STATE.
4as7	EG5 COMPLEX 1

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 28)

Sites (28, 28)