4B68 - JenaLib

Title :   A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), RE-OXIDISED STATE BOUND TO NADP AND ARG

Authors :   S. Franceschini, M. Fedkenheuer, N. J. Vogelaar, H. H. Robinson, P. Sob A. Mattevi

Date :   09 Aug 12 (Deposition) - 03 Oct 12 (Release) - 03 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.29

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Oxidoreductase, Siderophore (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Franceschini, M. Fedkenheuer, N. J. Vogelaar, H. H. Robinson, P. Sobrado, A. Mattevi
Structural Insight Into The Mechanism Of Oxygen Activation And Substrate Selectivity Of Flavin-Dependent N- Hydroxylating Monooxygenases.
Biochemistry V. 51 7043 2012
PubMed-ID: 22928747 | Reference-DOI: 10.1021/BI301072W

Compounds

Molecule 1 - L-ORNITHINE N5 MONOOXYGENASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organism Scientific	:	ASPERGILLUS FUMIGATUS
	Organism Taxid	:	746128
	Synonym	:	L-ORNITHINE N5-OXYGENASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 10)

Asymmetric Unit (5, 10)

No.	Name	Count	Type	Full Name
1	ARG	1	Mod. Amino Acid	ARGININE
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	GOL	6	Ligand/Ion	GLYCEROL
4	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (5, 40)

No.	Name	Count	Type	Full Name
1	ARG	4	Mod. Amino Acid	ARGININE
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	GOL	24	Ligand/Ion	GLYCEROL
4	NAP	4	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5	SO4	4	Ligand/Ion	SULFATE ION

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:102 , ILE A:103 , LYS A:107 , ASN A:293 , PHE A:296 , THR A:322 , ASN A:323 , LEU A:467 , SER A:469 , NAP A:1493 , HOH A:2047 , HOH A:2050 , HOH A:2134 , HOH A:2153	BINDING SITE FOR RESIDUE ARG A 503
02	AC2	SOFTWARE	GLY A:46 , GLY A:48 , PRO A:49 , ALA A:50 , LEU A:82 , GLU A:83 , ARG A:84 , GLN A:85 , TRP A:90 , HIS A:91 , MET A:101 , GLN A:102 , ILE A:103 , ARG A:144 , GLU A:166 , GLU A:167 , VAL A:168 , ILE A:210 , GLY A:211 , TYR A:407 , SER A:466 , LEU A:467 , LEU A:468 , NAP A:1493 , GOL A:1500 , HOH A:2015 , HOH A:2028 , HOH A:2029 , HOH A:2108 , HOH A:2229 , HOH A:2236	BINDING SITE FOR RESIDUE FAD A1492
03	AC3	SOFTWARE	LYS A:100 , GLN A:102 , ARG A:144 , PRO A:217 , SER A:254 , GLY A:255 , GLN A:256 , SER A:257 , GLU A:260 , ARG A:279 , ASN A:323 , SER A:325 , ALA A:404 , THR A:405 , GLY A:406 , TYR A:407 , ARG A:503 , FAD A:1492 , GOL A:1500 , HOH A:2125 , HOH A:2132 , HOH A:2133 , HOH A:2142 , HOH A:2144 , HOH A:2179 , HOH A:2202 , HOH A:2243	BINDING SITE FOR RESIDUE NAP A1493
04	AC4	SOFTWARE	LEU A:125 , HIS A:126 , GLY A:129 , ARG A:130 , LEU A:131 , ILE A:132 , HOH A:2244 , HOH A:2245	BINDING SITE FOR RESIDUE SO4 A1494
05	AC5	SOFTWARE	CYS A:80 , SER A:159 , ASP A:160 , VAL A:162 , ARG A:201	BINDING SITE FOR RESIDUE GOL A1495
06	AC6	SOFTWARE	HIS A:133 , GLU A:294 , TYR A:336 , MET A:339 , TYR A:340 , ARG A:343	BINDING SITE FOR RESIDUE GOL A1496
07	AC7	SOFTWARE	GLN A:420 , ARG A:423 , GLY A:426 , GLN A:427 , ASP A:428	BINDING SITE FOR RESIDUE GOL A1497
08	AC8	SOFTWARE	PRO A:142 , ALA A:143 , GLU A:146 , ASN A:337 , LEU A:341 , HOH A:2043	BINDING SITE FOR RESIDUE GOL A1498
09	AC9	SOFTWARE	LYS A:128 , ASP A:149 , ARG A:152 , GLN A:156 , PRO A:178 , HOH A:2088 , HOH A:2247	BINDING SITE FOR RESIDUE GOL A1499
10	BC1	SOFTWARE	ARG A:409 , FAD A:1492 , NAP A:1493 , HOH A:2176 , HOH A:2204 , HOH A:2229	BINDING SITE FOR RESIDUE GOL A1500

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:455
 aligned with SIDA_ASPFU | E9QYP0 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:469
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489         
           SIDA_ASPFU    30 RLRSTPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMVQSIFGEQLERAAVQGHQLR 498
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee..hhhhhhhhhhhhhhh....hhhhhhh.....eeee........hhhhh........hhhhh...........hhhhhhhhh.hhhhhhh......hhhhhhhhhhhhhhhhhh.ee..eeeeeeeee..........eeeeeeee.....eeeeeeeeeee....ee...........eee..hhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.hhhhh.eeee..eeeeeee.......eeeeeee...--------...eeee.eeee...ee..hhhhhhhhhhhhh..........................eeee...hhhhhh.......hhhhhhhhhhhhhhhhhhhhhh------. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4b68 A  30 RLRSTPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKP--------VKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMVQSIFGEQLERAA------R 503
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379   |     -  |    399       409       419       429       439       449       459       469       479       489 |      |
                                                                                                                                                                                                                                                                                                                                                                                           383      392                                                                                                491    503

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (19, 19)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

4b63	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO NADP AND ORNITHINE
4b64	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO NADP AND LYSINE
4b65	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), REDUCED STATE BOUND TO NADP(H)
4b66	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), REDUCED STATE BOUND TO NADP AND ARG
4b67	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), RE-OXIDISED STATE BOUND TO NADP AND ORNITHINE
4b69	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO ORNITHINE

Description