4B63 - JenaLib

Title :   A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO NADP AND ORNITHINE

Authors :   S. Franceschini, M. Fedkenheuer, N. J. Vogelaar, H. H. Robinson, P. Sob A. Mattevi

Date :   09 Aug 12 (Deposition) - 03 Oct 12 (Release) - 03 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Oxidoreductase, Siderophore, Flavin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Franceschini, M. Fedkenheuer, N. J. Vogelaar, H. H. Robinson, P. Sobrado, A. Mattevi
Structural Insight Into The Mechanism Of Oxygen Activation And Substrate Selectivity Of Flavin-Dependent N- Hydroxylating Monooxygenases.
Biochemistry V. 51 7043 2012
PubMed-ID: 22928747 | Reference-DOI: 10.1021/BI301072W

Compounds

Molecule 1 - L-ORNITHINE N5 MONOOXYGENASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organism Scientific	:	ASPERGILLUS FUMIGATUS
	Organism Taxid	:	746128
	Synonym	:	L-ORNITHINE N5-OXYGENASE

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (5, 8)

Asymmetric Unit (5, 8)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	GOL	4	Ligand/Ion	GLYCEROL
3	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
4	ORN	1	Ligand/Ion	L-ORNITHINE
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (5, 32)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	GOL	16	Ligand/Ion	GLYCEROL
3	NAP	4	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
4	ORN	4	Ligand/Ion	L-ORNITHINE
5	SO4	4	Ligand/Ion	SULFATE ION

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:46 , GLY A:48 , PRO A:49 , ALA A:50 , LEU A:82 , GLU A:83 , ARG A:84 , GLN A:85 , TRP A:90 , HIS A:91 , MET A:94 , MET A:101 , GLN A:102 , ILE A:103 , GLU A:166 , GLU A:167 , VAL A:168 , ALA A:209 , ILE A:210 , GLY A:211 , TYR A:407 , ARG A:409 , SER A:466 , LEU A:467 , LEU A:468 , NAP A:1493 , HOH A:2013 , HOH A:2025 , HOH A:2114 , HOH A:2117 , HOH A:2215 , HOH A:2216 , HOH A:2251 , HOH A:2257	BINDING SITE FOR RESIDUE FAD A1492
2	AC2	SOFTWARE	LYS A:100 , GLN A:102 , ARG A:144 , PRO A:217 , SER A:254 , GLY A:255 , GLN A:256 , SER A:257 , GLU A:260 , ARG A:279 , ASN A:323 , SER A:325 , ALA A:404 , THR A:405 , GLY A:406 , FAD A:1492 , ORN A:1494 , HOH A:2046 , HOH A:2127 , HOH A:2136 , HOH A:2137 , HOH A:2145 , HOH A:2182 , HOH A:2183 , HOH A:2185 , HOH A:2213 , HOH A:2258 , HOH A:2259	BINDING SITE FOR RESIDUE NAP A1493
3	AC3	SOFTWARE	GLN A:102 , ILE A:103 , LYS A:107 , ASN A:293 , PHE A:296 , ASN A:323 , SER A:469 , NAP A:1493 , HOH A:2044 , HOH A:2046 , HOH A:2049	BINDING SITE FOR RESIDUE ORN A1494
4	AC4	SOFTWARE	THR A:139 , LEU A:141 , ARG A:328 , HOH A:2083 , HOH A:2084	BINDING SITE FOR RESIDUE SO4 A1495
5	AC5	SOFTWARE	PHE A:291 , GLU A:294 , TYR A:336 , MET A:339 , TYR A:340 , ARG A:343 , TRP A:352 , HOH A:2189 , HOH A:2200 , HOH A:2260	BINDING SITE FOR RESIDUE GOL A1496
6	AC6	SOFTWARE	LEU A:125 , HIS A:126 , GLY A:129 , ARG A:130 , LEU A:131 , ILE A:132 , HOH A:2261	BINDING SITE FOR RESIDUE GOL A1497
7	AC7	SOFTWARE	PRO A:142 , ALA A:143 , GLU A:146 , ASN A:337 , LEU A:341 , HOH A:2085 , HOH A:2262	BINDING SITE FOR RESIDUE GOL A1498
8	AC8	SOFTWARE	LYS A:128 , ASP A:149 , ARG A:152 , TRP A:153 , GLN A:156 , PRO A:178 , HOH A:2094	BINDING SITE FOR RESIDUE GOL A1499

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:451
 aligned with SIDA_ASPFU | E9QYP0 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:463
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488   
           SIDA_ASPFU    29 PRLRSTPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMVQSIFGEQLERAA 491
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee..hhhhhhhhhhhhhhhh.......----....eeeee.......hhhhh........hhhhh...........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.eee.eeeeeeeee..........eeeeeeee.....eeeeeeeeeee....ee...........eee..hhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.hhhhh..eee..eeeeeee.......eeeeeee...--------...eeee.eeee...ee..hhhhhhhhhhhhh..........................eeee...hhhhhh.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4b63 A  29 PRLRSTPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSA----AQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKP--------VKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMVQSIFGEQLERAA 491
                                    38        48        58        68 |    | 78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378    |    -   |   398       408       418       428       438       448       458       468       478       488   
                                                                    70   75                                                                                                                                                                                                                                                                                                                 383      392

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (19, 19)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

4b64	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO NADP AND LYSINE
4b65	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), REDUCED STATE BOUND TO NADP(H)
4b66	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), REDUCED STATE BOUND TO NADP AND ARG
4b67	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), RE-OXIDISED STATE BOUND TO NADP AND ORNITHINE
4b68	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA), RE-OXIDISED STATE BOUND TO NADP AND ARG
4b69	A. FUMIGATUS ORNITHINE HYDROXYLASE (SIDA) BOUND TO ORNITHINE

Description