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(-) Description

Title :  HAFNIA ALVEI PHYTASE APO FORM
 
Authors :  A. Ariza, O. V. Moroz, E. B. Blagova, J. P. Turkenburg, J. Vevodova, S. Ro J. Vind, C. Sjoholm, S. F. Lassen, L. De Maria, V. Glitsoe, L. K. Skov, K. S. Wilson
Date :  26 Apr 12  (Deposition) - 08 May 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ariza, O. V. Moroz, E. V. Blagova, J. P. Turkenburg, J. Waterman, S. M. Roberts, J. Vind, C. Sjoholm, S. F. Lassen, L. De Maria, V. Glitsoe, L. K. Skov, K. S. Wilson
Degradation Of Phytate By The 6-Phytase From Hafnia Alvei: A Combined Structural And Solution Study.
Plos One V. 8 65062 2013
PubMed-ID: 23741456  |  Reference-DOI: 10.1371/JOURNAL.PONE.0065062

(-) Compounds

Molecule 1 - HISTIDINE ACID PHOSPHATASE
    Chains: A
    EC Number: 3.1.3.26
    Engineered: YES
    Expression System: ASPERGILLUS ORYZAE
    Expression System Taxid: 5062
    Organism Scientific: HAFNIA ALVEI
    Organism Taxid: 569
    Synonym: PHYTASE, MYO-INOSITOL HEXAKIS PHOSPHATE PHOSPHOHYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2GOL7Ligand/IonGLYCEROL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:115 , HIS A:116 , GLN A:118BINDING SITE FOR RESIDUE GOL A1414
02AC2SOFTWAREARG A:262 , SER A:314 , THR A:320 , TRP A:321 , ASN A:329BINDING SITE FOR RESIDUE GOL A1415
03AC3SOFTWARETHR A:277 , HIS A:280 , ALA A:281 , SER A:288 , ARG A:289 , PRO A:290 , LEU A:291BINDING SITE FOR RESIDUE GOL A1416
04AC4SOFTWAREARG A:52 , GLN A:365 , HOH A:2302BINDING SITE FOR RESIDUE GOL A1417
05AC5SOFTWAREMET A:137 , ASN A:206 , LYS A:207 , VAL A:208 , ASN A:270 , HOH A:2228BINDING SITE FOR RESIDUE GOL A1418
06AC6SOFTWARETHR A:320 , TRP A:321 , THR A:322 , VAL A:377 , ARG A:378 , LEU A:379 , ASN A:380 , HOH A:2257 , HOH A:2258BINDING SITE FOR RESIDUE GOL A1419
07AC7SOFTWAREASP A:364 , GLY A:375 , HOH A:2278 , HOH A:2287BINDING SITE FOR RESIDUE GOL A1420
08AC8SOFTWAREMET A:27 , THR A:28 , GLN A:29 , ARG A:32 , HOH A:2013BINDING SITE FOR RESIDUE ACT A1421
09AC9SOFTWARELYS A:268BINDING SITE FOR RESIDUE ACT A1422
10BC1SOFTWAREGLY A:7 , ASN A:344BINDING SITE FOR RESIDUE ACT A1423
11BC2SOFTWAREARG A:67 , PHE A:68 , GLU A:339BINDING SITE FOR RESIDUE ACT A1424

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:79 -A:110
2A:135 -A:410
3A:180 -A:189
4A:384 -A:393

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ARS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ARS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ARS)

(-) Exons   (0, 0)

(no "Exon" information available for 4ARS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:407
 aligned with G9Y2J2_HAFAL | G9Y2J2 from UniProtKB/TrEMBL  Length:446

    Alignment length:411
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445 
         G9Y2J2_HAFAL    36 TAPAGFQLEKVVILSRHGVRAPTKMTQTMRDVTPHQWPEWPVKLGYITPRGEHLISLMGGFYRERFQQQGLLPKDNCPTPDAVYVWADVDQRTRKTGEAFLAGLAPQCDLAIHHQQNTQQADPLFHPVKAGICSMDKSQVHAAVEKQAGTPIETLNQRYQASLALMSSVLDFPKSPYCQQHNIGKLCDFSQAMPSRLAINDDGNKVALEGAVGLASTLAEIFLLEHAQGMPKVAWGNIHTEQQWNSLLKLHNAQFDLMSRTPYIAKHNGTPLLQTIAHALGSNITSRPLPDISPDNKILFIAGHDTNIANISGMLGMTWTLPGQPDNTPPGGALVFERWVDNAGKPYVSVNMVYQTLAQLHDQAPLTLQHPAGSVRLNIPGCSDQTPDGYCPLSTFSRLVSHSVEPACQLP 446
               SCOP domains d4arsa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeee.........hhhhhhh...............hhhhhhhhhhhhhhhhhhhhhh.............eeeee..hhhhhhhhhhhhhhhh.......ee.....................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..----.hhhhhh..eeee......eeeehhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeeeeehhhhhhhhhhhhh................eeeeeeee.....eeeeeeeee.hhhhhhhh.........eeee..............eehhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ars A   3 TAPAGFQLERVVILSRHGVRAPTKMTQTMRDVTPHQWPEWPVKLGYITPRGEHLISLMGGFYRERFQQQGLLPKDNCPTPDAVYVWADVDQRTRKTGEAFLAGLAPQCDLAIHHQQNTQQADPLFHPVKAGICSMDKSQVHAAVEKQAGTPIETLNQRYQASLALMSSVLDFPKSPYCQQHN----CDFSQAMPSRLAINDDGNKVALEGAVGLASTLAEIFLLEHAQGMPKVAWGNIHTEQQWNSLLKLHNAQFDLMSRTPYIAKHNGTPLLQTIAHALGSNITSRPLPDISPDNKILFIAGHDTNIANISGMLGMTWTLPGQPDNTPPGGALVFERWVDNAGKPYVSVNMVYQTLAQLHDQAPLTLQHPAGSVRLNIPGCSDQTPDGYCPLSTFSRLVSHSVEPACQLP 413
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182 |    |192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412 
                                                                                                                                                                                                               184  189                                                                                                                                                                                                                                


Chain A from PDB  Type:PROTEIN  Length:407
 aligned with H9TUK5_HAFAL | H9TUK5 from UniProtKB/TrEMBL  Length:446

    Alignment length:411
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445 
         H9TUK5_HAFAL    36 TAPAGFQLEKVVILSRHGVRAPTKMTQTMRDVTPHQWPEWPVKLGYITPRGEHLISLMGGFYRERFQQQGLLPKDNCPTPDAVYVWADVDQRTRKTGEAFLAGLAPQCDLAIHHQQNTQQADPLFHPVKAGICSMDKSQVHAAVEKQAGTPIETLNQRYQASLALMSSVLDFPKSPYCQQHNIGKLCDFSQAMPSRLAINDDGNKVALEGAVGLASTLAEIFLLEHAQGMPKVAWGNIHTEQQWNSLLKLHNAQFDLMSRTPYIAKHNGTPLLQTIAHALGSNITSRPLPDISPDNKILFIAGHDTNIANISGMLGMTWTLPGQPDNTPPGGALVFERWVDNAGKPYVSVNMVYQTLAQLHDQAPLTLQHPAGSVRLNIPGCSDQTPDGYCPLSTFSRLVSHSVEPACQLP 446
               SCOP domains d4arsa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeee.........hhhhhhh...............hhhhhhhhhhhhhhhhhhhhhh.............eeeee..hhhhhhhhhhhhhhhh.......ee.....................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..----.hhhhhh..eeee......eeeehhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeeeeehhhhhhhhhhhhh................eeeeeeee.....eeeeeeeee.hhhhhhhh.........eeee..............eehhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ars A   3 TAPAGFQLERVVILSRHGVRAPTKMTQTMRDVTPHQWPEWPVKLGYITPRGEHLISLMGGFYRERFQQQGLLPKDNCPTPDAVYVWADVDQRTRKTGEAFLAGLAPQCDLAIHHQQNTQQADPLFHPVKAGICSMDKSQVHAAVEKQAGTPIETLNQRYQASLALMSSVLDFPKSPYCQQHN----CDFSQAMPSRLAINDDGNKVALEGAVGLASTLAEIFLLEHAQGMPKVAWGNIHTEQQWNSLLKLHNAQFDLMSRTPYIAKHNGTPLLQTIAHALGSNITSRPLPDISPDNKILFIAGHDTNIANISGMLGMTWTLPGQPDNTPPGGALVFERWVDNAGKPYVSVNMVYQTLAQLHDQAPLTLQHPAGSVRLNIPGCSDQTPDGYCPLSTFSRLVSHSVEPACQLP 413
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182 |    |192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412 
                                                                                                                                                                                                               184  189
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ARS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ARS)

(-) Gene Ontology  (2, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (G9Y2J2_HAFAL | G9Y2J2)
molecular function
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

Chain A   (H9TUK5_HAFAL | H9TUK5)
molecular function
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

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  4ars
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  H9TUK5_HAFAL | H9TUK5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G9Y2J2_HAFAL | G9Y2J2: 4aro 4aru
UniProtKB/TrEMBL
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(-) Related Entries Specified in the PDB File

4aro HAFNIA ALVEI PHYTASE IN COMPLEX WITH MYO-INOSITOL HEXAKIS SULPHATE
4aru HAFNIA ALVEI PHYTASE IN COMPLEX WITH TARTRATE