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(-) Description

Title :  HAFNIA ALVEI PHYTASE IN COMPLEX WITH TARTRATE
 
Authors :  A. Ariza, O. V. Moroz, E. B. Blagova, J. P. Turkenburg, J. Vevodova, S. Ro J. Vind, C. Sjoholm, S. F. Lassen, L. De Maria, V. Glitsoe, L. K. Skov, K. S. Wilson
Date :  26 Apr 12  (Deposition) - 08 May 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, 6-Phytase, Phosphohydrolase, Happ (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ariza, O. V. Moroz, E. V. Blagova, J. P. Turkenburg, J. Waterman, S. M. Roberts, J. Vind, C. Sjoholm, S. F. Lassen, L. De Maria, V. Glitsoe, L. K. Skov, K. S. Wilson
Degradation Of Phytate By The 6-Phytase From Hafnia Alvei: A Combined Structural And Solution Study.
Plos One V. 8 65062 2013
PubMed-ID: 23741456  |  Reference-DOI: 10.1371/JOURNAL.PONE.0065062

(-) Compounds

Molecule 1 - HISTIDINE ACID PHOSPHATASE
    Chains: A
    EC Number: 3.1.3.26
    Engineered: YES
    Expression System: ASPERGILLUS ORYZAE
    Expression System Taxid: 5062
    Fragment: RESIDUES 34-446
    Organism Scientific: HAFNIA ALVEI
    Organism Taxid: 569
    Synonym: PHYTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2K1Ligand/IonPOTASSIUM ION
3NA1Ligand/IonSODIUM ION
4TLA2Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:18 , HIS A:19 , ARG A:22 , ARG A:94 , HIS A:306 , ASP A:307 , HOH A:2075 , HOH A:2312 , HOH A:2663 , HOH A:2664BINDING SITE FOR RESIDUE TLA A1414
2AC2SOFTWAREILE A:114 , HIS A:115 , HIS A:116 , GLN A:118BINDING SITE FOR RESIDUE TLA A1415
3AC3SOFTWAREARG A:22 , PRO A:24 , THR A:25 , ILE A:223 , HOH A:2076 , HOH A:2440BINDING SITE FOR RESIDUE NA A1416
4AC4SOFTWAREASN A:380 , ILE A:381 , CYS A:384 , GLN A:387 , HOH A:2629 , HOH A:2636BINDING SITE FOR RESIDUE K A1417
5AC5SOFTWAREPRO A:51 , ARG A:52 , GLN A:230 , HOH A:2051 , HOH A:2063 , HOH A:2065BINDING SITE FOR RESIDUE CL A1418
6AC6SOFTWAREVAL A:44 , LYS A:45 , TYR A:48 , GLN A:109 , HOH A:2057 , HOH A:2134BINDING SITE FOR RESIDUE CL A1419

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:79 -A:110
2A:135 -A:410
3A:180 -A:189
4A:384 -A:393

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ARU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ARU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ARU)

(-) Exons   (0, 0)

(no "Exon" information available for 4ARU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:405
 aligned with G9Y2J2_HAFAL | G9Y2J2 from UniProtKB/TrEMBL  Length:446

    Alignment length:410
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446
         G9Y2J2_HAFAL    37 APAGFQLEKVVILSRHGVRAPTKMTQTMRDVTPHQWPEWPVKLGYITPRGEHLISLMGGFYRERFQQQGLLPKDNCPTPDAVYVWADVDQRTRKTGEAFLAGLAPQCDLAIHHQQNTQQADPLFHPVKAGICSMDKSQVHAAVEKQAGTPIETLNQRYQASLALMSSVLDFPKSPYCQQHNIGKLCDFSQAMPSRLAINDDGNKVALEGAVGLASTLAEIFLLEHAQGMPKVAWGNIHTEQQWNSLLKLHNAQFDLMSRTPYIAKHNGTPLLQTIAHALGSNITSRPLPDISPDNKILFIAGHDTNIANISGMLGMTWTLPGQPDNTPPGGALVFERWVDNAGKPYVSVNMVYQTLAQLHDQAPLTLQHPAGSVRLNIPGCSDQTPDGYCPLSTFSRLVSHSVEPACQLP 446
               SCOP domains d4arua_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.........hhhhhhh...............hhhhhhhhhhhhhhhhhhhhhh.........hhh.eeeee..hhhhhhhhhhhhhhhh.......ee.....................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----.hhhhhh..eeee......eeeehhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh................eeeeeehhhhhhhhhhhhh................eeeeeeee.....eeeeeeeee.hhhhhhh..........eeee..............eehhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aru A   4 APAGFQLERVVILSRHGVRAPTKMTQTMRDVTPHQWPEWPVKLGYITPRGEHLISLMGGFYRERFQQQGLLPKDNCPTPDAVYVWADVDQRTRKTGEAFLAGLAPQCDLAIHHQQNTQQADPLFHPVKAGICSMDKSQVHAAVEKQAGTPIETLNQRYQASLALMSSVLDFPKSPYCQQH-----CDFSQAMPSRLAINDDGNKVALEGAVGLASTLAEIFLLEHAQGMPKVAWGNIHTEQQWNSLLKLHNAQFDLMSRTPYIAKHNGTPLLQTIAHALGSNITSRPLPDISPDNKILFIAGHDTNIANISGMLGMTWTLPGQPDNTPPGGALVFERWVDNAGKPYVSVNMVYQTLAQLHDQAPLTLQHPAGSVRLNIPGCSDQTPDGYCPLSTFSRLVSHSVEPACQLP 413
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183     | 193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413
                                                                                                                                                                                                             183   189                                                                                                                                                                                                                                


Chain A from PDB  Type:PROTEIN  Length:405
 aligned with H9TUK5_HAFAL | H9TUK5 from UniProtKB/TrEMBL  Length:446

    Alignment length:410
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446
         H9TUK5_HAFAL    37 APAGFQLEKVVILSRHGVRAPTKMTQTMRDVTPHQWPEWPVKLGYITPRGEHLISLMGGFYRERFQQQGLLPKDNCPTPDAVYVWADVDQRTRKTGEAFLAGLAPQCDLAIHHQQNTQQADPLFHPVKAGICSMDKSQVHAAVEKQAGTPIETLNQRYQASLALMSSVLDFPKSPYCQQHNIGKLCDFSQAMPSRLAINDDGNKVALEGAVGLASTLAEIFLLEHAQGMPKVAWGNIHTEQQWNSLLKLHNAQFDLMSRTPYIAKHNGTPLLQTIAHALGSNITSRPLPDISPDNKILFIAGHDTNIANISGMLGMTWTLPGQPDNTPPGGALVFERWVDNAGKPYVSVNMVYQTLAQLHDQAPLTLQHPAGSVRLNIPGCSDQTPDGYCPLSTFSRLVSHSVEPACQLP 446
               SCOP domains d4arua_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.........hhhhhhh...............hhhhhhhhhhhhhhhhhhhhhh.........hhh.eeeee..hhhhhhhhhhhhhhhh.......ee.....................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----.hhhhhh..eeee......eeeehhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh................eeeeeehhhhhhhhhhhhh................eeeeeeee.....eeeeeeeee.hhhhhhh..........eeee..............eehhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aru A   4 APAGFQLERVVILSRHGVRAPTKMTQTMRDVTPHQWPEWPVKLGYITPRGEHLISLMGGFYRERFQQQGLLPKDNCPTPDAVYVWADVDQRTRKTGEAFLAGLAPQCDLAIHHQQNTQQADPLFHPVKAGICSMDKSQVHAAVEKQAGTPIETLNQRYQASLALMSSVLDFPKSPYCQQH-----CDFSQAMPSRLAINDDGNKVALEGAVGLASTLAEIFLLEHAQGMPKVAWGNIHTEQQWNSLLKLHNAQFDLMSRTPYIAKHNGTPLLQTIAHALGSNITSRPLPDISPDNKILFIAGHDTNIANISGMLGMTWTLPGQPDNTPPGGALVFERWVDNAGKPYVSVNMVYQTLAQLHDQAPLTLQHPAGSVRLNIPGCSDQTPDGYCPLSTFSRLVSHSVEPACQLP 413
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183     | 193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413
                                                                                                                                                                                                             183   189
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ARU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ARU)

(-) Gene Ontology  (2, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (G9Y2J2_HAFAL | G9Y2J2)
molecular function
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

Chain A   (H9TUK5_HAFAL | H9TUK5)
molecular function
    GO:0003993    acid phosphatase activity    Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an acid pH optimum.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.

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  4aru
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  H9TUK5_HAFAL | H9TUK5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        G9Y2J2_HAFAL | G9Y2J2: 4aro 4ars
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(-) Related Entries Specified in the PDB File

4aro HAFNIA ALVEI PHYTASE IN COMPLEX WITH MYO-INOSITOL HEXAKIS SULPHATE
4ars HAFNIA ALVEI PHYTASE APO FORM
4arv YERSINIA KRISTENSENII PHYTASE APO FORM