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(-) Description

Title :  SMALL RNA PHAGE PRR1 IN COMPLEX WITH AN RNA OPERATOR FRAGMENT
 
Authors :  M. Persson, K. Tars, L. Liljas
Date :  16 Mar 12  (Deposition) - 27 Feb 13  (Release) - 03 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,C,R,S
Biol. Unit 1:  A,B,C,R,S  (60x)
Keywords :  Virus, Capsid, Capsid Proteins, Ions, Metals (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Persson, K. Tars, L. Liljas
Prr1 Coat Protein Binding To Its Rna Translational Operator
Acta Crystallogr. , Sect. D V. 69 367 2013
PubMed-ID: 23519411  |  Reference-DOI: 10.1107/S0907444912047464

(-) Compounds

Molecule 1 - COAT PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PSEUDOMONAS PHAGE PRR1
    Organism Taxid: 12024
 
Molecule 2 - 5'-R(*CP*CP*AP*UP*AP*AP*GP*GP*AP*GP*CP*UP*AP*CP *CP*UP*AP*UP*GP*GP)-3'
    Chains: R, S
    Engineered: YES
    Organism Scientific: PSEUDOMONAS PHAGE PRR1
    Organism Taxid: 12024
    Synonym: COAT PROTEIN-BINDING RNA HAIRPIN
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCRS
Biological Unit 1 (60x): ABCRS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:1 , TYR B:131 , GLN C:2BINDING SITE FOR RESIDUE CA B 132

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ANG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ANG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ANG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ANG)

(-) Exons   (0, 0)

(no "Exon" information available for 4ANG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
 aligned with COAT_BPPRR | P03616 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 
           COAT_BPPRR     1 AQLQNLVLKDREATPNDHTFVPRDIRDNVGEVVESTGVPIGESRFTISLRKTSNGRYKSTLKLVVPVVQSQTVNGIVTPVVVRTSYVTVDFDYDARSTTKERNNFVGMIADALKADLMLVHDTIVNLQGVY 131
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.......eeeeeeeee...eeeeee........eeeeeeeee....eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhh...hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ang A   1 AQLQNLVLKDREATPNDHTFVPRDIRDNVGEVVESTGVPIGESRFTISLRKTSNGRYKSTLKLVVPVVQSQTVNGIVTPVVVRTSYVTVDFDYDARSTTKERNNFVGMIADALKADKMLVHDTIVNLQGVY 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 


Chain B from PDB  Type:PROTEIN  Length:131
 aligned with COAT_BPPRR | P03616 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 
           COAT_BPPRR     1 AQLQNLVLKDREATPNDHTFVPRDIRDNVGEVVESTGVPIGESRFTISLRKTSNGRYKSTLKLVVPVVQSQTVNGIVTPVVVRTSYVTVDFDYDARSTTKERNNFVGMIADALKADLMLVHDTIVNLQGVY 131
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.......eeeeeeeee...eeeeee........eeeeeeeee....eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhh...hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ang B   1 AQLQNLVLKDREATPNDHTFVPRDIRDNVGEVVESTGVPIGESRFTISLRKTSNGRYKSTLKLVVPVVQSQTVNGIVTPVVVRTSYVTVDFDYDARSTTKERNNFVGMIADALKADKMLVHDTIVNLQGVY 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 


Chain C from PDB  Type:PROTEIN  Length:131
 aligned with COAT_BPPRR | P03616 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 
           COAT_BPPRR     1 AQLQNLVLKDREATPNDHTFVPRDIRDNVGEVVESTGVPIGESRFTISLRKTSNGRYKSTLKLVVPVVQSQTVNGIVTPVVVRTSYVTVDFDYDARSTTKERNNFVGMIADALKADLMLVHDTIVNLQGVY 131
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.......eeeeeeeee...eeeeee........eeeeeeeee....eeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeee...hhhhhhhhhhhhhhhhh..hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ang C   1 AQLQNLVLKDREATPNDHTFVPRDIRDNVGEVVESTGVPIGESRFTISLRKTSNGRYKSTLKLVVPVVQSQTVNGIVTPVVVRTSYVTVDFDYDARSTTKERNNFVGMIADALKADKMLVHDTIVNLQGVY 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 


Chain R from PDB  Type:RNA  Length:14
                                              
                 4ang R   4 UAAGGAGCUACCUA  17
                                    13    


Chain S from PDB  Type:RNA  Length:13
                                             
                 4ang S   4 UAAGGAGUACCUA  17
                                  ||14   
                                 10|     
                                  12
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ANG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ANG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ANG)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (COAT_BPPRR | P03616)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0039617    T=3 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=3 symmetry. The T=3 capsid is composed of 12 pentameric and 20 hexameric capsomeres.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COAT_BPPRR | P03616: 2vf9

(-) Related Entries Specified in the PDB File

2vf9 CRYSTAL STRUCTURE OF BACTERIOPHAGE PRR1