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Sequence, Chains, Asymmetric and Biological Units

Title SMALL RNA PHAGE PRR1 IN COMPLEX WITH AN RNA OPERATOR FRAGMEN
Keywords VIRUS, CAPSID, CAPSID PROTEINS, IONS, METALS
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   COAT PROTEIN  A 131 1024 0
2  Protein   COAT PROTEIN  B 131 1024 0
3  Protein   COAT PROTEIN  C 131 1024 0
4  DNA/RNA    R 14 269 0
5  RNA    S 13 265 0
6  Ligand   COAT PROTEIN  B 1 0 1
total       421 3606 1

Proteins
Unit 1 ALA1 GLN2 LEU3 GLN4 ASN5 LEU6 VAL7 LEU8 LYS9 ASP10 ARG11 GLU12 ALA13 THR14 PRO15 ASN16 ASP17 HIS18 THR19 PHE20 VAL21 PRO22 ARG23 ASP24 ILE25 ARG26 ASP27 ASN28 VAL29 GLY30 GLU31 VAL32 VAL33 GLU34 SER35 THR36 GLY37 VAL38 PRO39 ILE40 GLY41 GLU42 SER43 ARG44 PHE45 THR46 ILE47 SER48 LEU49 ARG50 LYS51 THR52 SER53 ASN54 GLY55 ARG56 TYR57 LYS58 SER59 THR60 LEU61 LYS62 LEU63 VAL64 VAL65 PRO66 VAL67 VAL68 GLN69 SER70 GLN71 THR72 VAL73 ASN74 GLY75 ILE76 VAL77 THR78 PRO79 VAL80 VAL81 VAL82 ARG83 THR84 SER85 TYR86 VAL87 THR88 VAL89 ASP90 PHE91 ASP92 TYR93 ASP94 ALA95 ARG96 SER97 THR98 THR99 LYS100 GLU101 ARG102 ASN103 ASN104 PHE105 VAL106 GLY107 MET108 ILE109 ALA110 ASP111 ALA112 LEU113 LYS114 ALA115 ASP116 LYS117 MET118 LEU119 VAL120 HIS121 ASP122 THR123 ILE124 VAL125 ASN126 LEU127 GLN128 GLY129 VAL130 TYR131
Unit 2 ALA1 GLN2 LEU3 GLN4 ASN5 LEU6 VAL7 LEU8 LYS9 ASP10 ARG11 GLU12 ALA13 THR14 PRO15 ASN16 ASP17 HIS18 THR19 PHE20 VAL21 PRO22 ARG23 ASP24 ILE25 ARG26 ASP27 ASN28 VAL29 GLY30 GLU31 VAL32 VAL33 GLU34 SER35 THR36 GLY37 VAL38 PRO39 ILE40 GLY41 GLU42 SER43 ARG44 PHE45 THR46 ILE47 SER48 LEU49 ARG50 LYS51 THR52 SER53 ASN54 GLY55 ARG56 TYR57 LYS58 SER59 THR60 LEU61 LYS62 LEU63 VAL64 VAL65 PRO66 VAL67 VAL68 GLN69 SER70 GLN71 THR72 VAL73 ASN74 GLY75 ILE76 VAL77 THR78 PRO79 VAL80 VAL81 VAL82 ARG83 THR84 SER85 TYR86 VAL87 THR88 VAL89 ASP90 PHE91 ASP92 TYR93 ASP94 ALA95 ARG96 SER97 THR98 THR99 LYS100 GLU101 ARG102 ASN103 ASN104 PHE105 VAL106 GLY107 MET108 ILE109 ALA110 ASP111 ALA112 LEU113 LYS114 ALA115 ASP116 LYS117 MET118 LEU119 VAL120 HIS121 ASP122 THR123 ILE124 VAL125 ASN126 LEU127 GLN128 GLY129 VAL130 TYR131
Unit 3 ALA1 GLN2 LEU3 GLN4 ASN5 LEU6 VAL7 LEU8 LYS9 ASP10 ARG11 GLU12 ALA13 THR14 PRO15 ASN16 ASP17 HIS18 THR19 PHE20 VAL21 PRO22 ARG23 ASP24 ILE25 ARG26 ASP27 ASN28 VAL29 GLY30 GLU31 VAL32 VAL33 GLU34 SER35 THR36 GLY37 VAL38 PRO39 ILE40 GLY41 GLU42 SER43 ARG44 PHE45 THR46 ILE47 SER48 LEU49 ARG50 LYS51 THR52 SER53 ASN54 GLY55 ARG56 TYR57 LYS58 SER59 THR60 LEU61 LYS62 LEU63 VAL64 VAL65 PRO66 VAL67 VAL68 GLN69 SER70 GLN71 THR72 VAL73 ASN74 GLY75 ILE76 VAL77 THR78 PRO79 VAL80 VAL81 VAL82 ARG83 THR84 SER85 TYR86 VAL87 THR88 VAL89 ASP90 PHE91 ASP92 TYR93 ASP94 ALA95 ARG96 SER97 THR98 THR99 LYS100 GLU101 ARG102 ASN103 ASN104 PHE105 VAL106 GLY107 MET108 ILE109 ALA110 ASP111 ALA112 LEU113 LYS114 ALA115 ASP116 LYS117 MET118 LEU119 VAL120 HIS121 ASP122 THR123 ILE124 VAL125 ASN126 LEU127 GLN128 GLY129 VAL130 TYR131

Nucleic acids
Unit 4 U4 A5 A6 G7 G8 A9 G10 C11 U12 A13 C14 C15 U16 A17
Unit 5 U4 A5 A6 G7 G8 A9 G10 U12 A13 C14 C15 U16 A17

Ligands
Unit 6 CA132

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany