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(-) Description

Title :  A MEGAVIRIDAE ORFAN GENE ENCODE A NEW NUCLEOTIDYL TRANSFERASE
 
Authors :  A. Lartigue, J. M. Claverie, S. Priet, C. Abergel
Date :  13 Mar 12  (Deposition) - 20 Mar 13  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Mimivirus, Transcription Coupled Dna Repair (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ciaccafava, A. Lartigue, P. Mansuelle, S. Jeudy, C. Abergel
A Megaviridae Orphan Gene Encodes A New Nucleotidyl Transferase
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MG662
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PETDUET-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Expression System Vector Type: PLASMID
    Organism Scientific: MEGAVIRUS CHILIENSIS
    Organism Taxid: 1094892

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:44 , ASP A:191BINDING SITE FOR RESIDUE MG A 1361
2AC2SOFTWAREGLY A:33 , SER A:34 , ASP A:44BINDING SITE FOR RESIDUE MG A 1362

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4AMS)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:-7 -Val A:-6
2Tyr A:52 -Pro A:53

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AMS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AMS)

(-) Exons   (0, 0)

(no "Exon" information available for 4AMS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:367
 aligned with G5CQN7_9VIRU | G5CQN7 from UniProtKB/TrEMBL  Length:371

    Alignment length:374
                                          1                                                                                                                                                                                                                                                                                                                                                                       
                                     -    |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356    
         G5CQN7_9VIRU     - --------------MLIYTYKLEKYVRTKIFPKILLIPDKNRYIIKGSFRRRVPFVTDIDVVNNVYPEISRENIYDEIIKLVNNIQSDPNIILAYLSCGTDERFKISTGSSKELSNIQSLLPDNEKNEFQLVLNKYYNDQQKKLFFLNELIWDHYKLRWKPEDVLIGSMNLANNVSVNFRETVENNSTILLQYYVKLGSYPVGIDVVINYQKIDLTPAYKNAALYQLQLANYSREYYYMLFPLRYYFKNNQDISQRLENIIEKKYGLYKQLMVRIDDYHTLYKSGNLKIDMATNIVIGILRDIEKLPGFESDTIYQIKKVATNNSPSIKIEEWDILLKVLYQEINTAVNNKSRKYFYRYIAMVPPQDRSKNYIS 360
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhh...hhh.eeee...........eeeeeee........hhhhhhhhhhhhhhh...eeeeeeeeee.hhhh....hhhhhhhh.....hhhhhhhhh..-------.hhhhhhhhhhhhhheeeehhhhhhhheeee...eeeehhhhhhh..eeeeeeeee....eeeeeeeee.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh......hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ams A -16 SHHHHHHSLEVLFGSLIYTYKLEKYVRTKIFPKILLIPDKNRYIIKGSFRRRVPFVTDIDVVNNVYPEISRENIYDEIIKLVNNIQSDPNIILAYLSCGTDERFKISTGSSKELSNIQSLLPDNEKNEFQLVL-------QKKLFFLNELIWDHYKLRWKPEDVLIGSMNLANNVSVNFRETVENNSTILLQYYVKLGSYPVGIDVVINYQKIDLTPAYKNAALYQLQLANYSREYYYMLFPLRYYFKNNQDISQRLENIIEKKYGLYKQLMVRIDDYHTLYKSGNLKIDMATNIVIGILRDIEKLPGFESDTIYQIKKVATNNSPSIKIEEWDILLKVLYQEINTAVNNKSRKYFYRYIAMVPPQDRSKNYIS 360
                                    -7  ||     6        16        26        36        46        56        66        76        86        96       106       116  |      -|      136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356    
                                       -4|                                                                                                                    119     127                                                                                                                                                                                                                                         
                                         0
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4AMS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AMS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AMS)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4AMS)

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