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(-) Description

Title :  THERMOTOGA MARITIMA FTSA:FTSZ(336-351)
 
Authors :  P. Szwedziak, J. Lowe
Date :  23 Sep 11  (Deposition) - 25 Apr 12  (Release) - 30 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Cell Cycle, Actin, Divisome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Szwedziak, Q. Wang, S. M. V. Freund, J. Lowe
Ftsa Forms Actin-Like Protofilaments
Embo J. V. 31 2249 2012
PubMed-ID: 22473211  |  Reference-DOI: 10.1038/EMBOJ.2012.76

(-) Compounds

Molecule 1 - CELL DIVISION PROTEIN FTSA, PUTATIVE
    Atcc: 43589
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: C41
    Expression System Vector: PTXB1
    Expression System Vector Type: PLASMID
    Fragment: FTSA, RESIDUES 1-419
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
 
Molecule 2 - CELL DIVISION PROTEIN FTSZ
    Atcc: 43589
    Chains: C, D
    Fragment: FTSZ, RESIDUES 336-351
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ATP2Ligand/IonADENOSINE-5'-TRIPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:16 , SER A:17 , ARG A:18 , TYR A:19 , LYS A:21 , SER A:84 , GLY A:214 , TYR A:215 , ILE A:242 , GLU A:257 , GLY A:336 , GLY A:337 , LYS A:340 , ILE A:341 , HOH A:2005 , HOH A:2146 , HOH A:2149BINDING SITE FOR RESIDUE ATP A1391
2AC2SOFTWAREGLY B:16 , SER B:17 , ARG B:18 , TYR B:19 , LYS B:21 , SER B:84 , GLY B:214 , TYR B:215 , MET B:238 , ILE B:242 , GLU B:257 , GLY B:337 , GLY B:338 , LYS B:340 , ILE B:341 , SER B:380 , HOH B:2008 , HOH B:2009 , HOH B:2013 , HOH B:2122 , HOH B:2123 , HOH B:2145BINDING SITE FOR RESIDUE ATP B1391

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4A2A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4A2A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4A2A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4A2A)

(-) Exons   (0, 0)

(no "Exon" information available for 4A2A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:372
 aligned with Q9WZU0_THEMA | Q9WZU0 from UniProtKB/TrEMBL  Length:419

    Alignment length:384
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386    
         Q9WZU0_THEMA     7 TVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA 390
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee----.eeeeeeeee...ee..ee.hhhhhhhhhhhhhhhhhhhhh.....eeeeee.....eeeeeeeeee.....ee.hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee...eee......ee.eeeeeeeeeeeehhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhheeeeee....eeeeeee..eeeeeeee..hhhhhhhhhhhhhh.hhhhhhhhhhhhh..........eeeee......eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..--------....eeeehhhhhh.hhhhhhhhhhh..eee.hhhhh.......hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4a2a A   7 TVFYTSIDIGSRYIKGLVLGK----WEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAK--------IPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA 390
                                    16        26|    |  36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316  |      - |     336       346       356       366       376       386    
                                               27   32                                                                                                                                                                                                                                                                                            319      328                                                              


Chain B from PDB  Type:PROTEIN  Length:377
 aligned with Q9WZU0_THEMA | Q9WZU0 from UniProtKB/TrEMBL  Length:419

    Alignment length:384
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386    
         Q9WZU0_THEMA     7 TVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA 390
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeeee-...eeeeeeeeee...ee..ee.hhhhhhhhhhhhhhhhhhhhh..--.eeeeee.....eeeeeeeeee.....ee.hhhhhhhhhhhhhhhh....eeeeeeeeeeeee...eee......ee.eeeeeeeeeeeehhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhheeeeee....eeeeeee..eeeeeeee..hhhhhhhhhhhhhh.hhhhhhhhhhhhh..........eeeee......eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.----.....eeeehhhhhh.hhhhhhhhhhh..eee..........ee.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4a2a B   7 TVFYTSIDIGSRYIKGLVLGK-DQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKS--SDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVE----GIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFA 390
                                    16        26| |     36        46        56        66       | -|       86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316     |   -|      336       346       356       366       376       386    
                                               27 |                                           74 77                                                                                                                                                                                                                                                  322  327                                                               
                                                 29                                                                                                                                                                                                                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:14
 aligned with FTSZ_THEMA | O08398 from UniProtKB/Swiss-Prot  Length:351

    Alignment length:14
                                   347    
           FTSZ_THEMA   338 DIPAIYRYGLEGLL 351
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ..hhhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4a2a C 338 DIPAIYRYGLEGLL 351
                                   347    


Chain D from PDB  Type:PROTEIN  Length:15
 aligned with FTSZ_THEMA | O08398 from UniProtKB/Swiss-Prot  Length:351

    Alignment length:15
                                   346     
           FTSZ_THEMA   337 GDIPAIYRYGLEGLL 351
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ...hhhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4a2a D 337 GDIPAIYRYGLEGLL 351
                                   346
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4A2A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4A2A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4A2A)

(-) Gene Ontology  (16, 22)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9WZU0_THEMA | Q9WZU0)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0043093    FtsZ-dependent cytokinesis    A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
cellular component
    GO:0032153    cell division site    The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
    GO:0009898    cytoplasmic side of plasma membrane    The leaflet the plasma membrane that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain C,D   (FTSZ_THEMA | O08398)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0043093    FtsZ-dependent cytokinesis    A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
cellular component
    GO:0032153    cell division site    The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTSZ_THEMA | O08398: 1w5f
UniProtKB/TrEMBL
        Q9WZU0_THEMA | Q9WZU0: 1e4f 1e4g 4a2b

(-) Related Entries Specified in the PDB File

1e4f FTSA (APO FORM) FROM THERMOTOGA MARITIMA
1e4g FTSA (ATP-BOUND FORM) FROM THERMOTOGA MARITIMA
1w5f FTSZ, T7 MUTATED, DOMAIN SWAPPED (T. MARITIMA)
4a2b THERMOTOGA MARITIMA FTSA WITH ATP GAMMA S