1W5F - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   FTSZ, T7 MUTATED, DOMAIN SWAPPED (T. MARITIMA)

Authors :   M. A. Oliva, S. C. Cordell, J. Lowe

Date :   06 Aug 04 (Deposition) - 01 Dec 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B

Keywords :   Cell Division, Cell-Division Protein, Complete Proteome, Gtp-Binding, Multigene Family, Septation, Tubulin, Ftsz, Filament, Z-Ring, Gtpase, Domain Swapped (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Oliva, S. C. Cordell, J. Lowe
Structural Insights Into Ftsz Protofilament Formation
Nat. Struct. Mol. Biol. V. 11 1243 2004
PubMed-ID: 15558053 | Reference-DOI: 10.1038/NSMB855

Molecule 1 - CELL DIVISION PROTEIN FTSZ
	Atcc	:	43589
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHIS17
	Expression System Strain	:	C41
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336
	Other Details	:	RESIDUES 217-225 (INLD..FADIE) HAVE BEEN REPLACED WITH IRLTSRFARIE

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	G2P	2	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
2	MG	2	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	G2P A:500 , HOH A:2030 , HOH A:2031 , HOH A:2182 , HOH A:2186	BINDING SITE FOR RESIDUE MG A 501
2	AC2	SOFTWARE	G2P B:500 , HOH B:2029 , HOH B:2031 , HOH B:2176 , HOH B:2177	BINDING SITE FOR RESIDUE MG B 501
3	AC3	SOFTWARE	GLY A:30 , GLY A:31 , ALA A:32 , ASN A:35 , ALA A:81 , GLY A:82 , GLY A:83 , GLY A:114 , GLY A:117 , GLY A:118 , THR A:119 , GLY A:120 , PRO A:145 , GLU A:149 , ARG A:153 , ASN A:176 , PHE A:193 , ALA A:196 , ASP A:197 , MG A:501 , HOH A:2002 , HOH A:2076 , HOH A:2083 , HOH A:2113 , HOH A:2182 , HOH A:2183 , HOH A:2184 , HOH A:2185 , HOH A:2186	BINDING SITE FOR RESIDUE G2P A 500
4	AC4	SOFTWARE	GLY B:30 , GLY B:31 , ALA B:32 , ASN B:35 , THR B:55 , ALA B:81 , GLY B:82 , GLY B:83 , GLY B:114 , GLY B:118 , THR B:119 , GLY B:120 , PRO B:145 , GLU B:149 , ARG B:153 , PHE B:193 , ALA B:196 , ASP B:197 , MG B:501 , HOH B:2005 , HOH B:2067 , HOH B:2074 , HOH B:2101 , HOH B:2174 , HOH B:2175 , HOH B:2176 , HOH B:2177 , HOH B:2178 , HOH B:2179	BINDING SITE FOR RESIDUE G2P B 500

(no "SS Bond" information available for 1W5F)

(no "Cis Peptide Bond" information available for 1W5F)

(no "SAP(SNP)/Variant" information available for 1W5F)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTSZ_1	PS01134	FtsZ protein signature 1.	FTSZ_THEMA	54-88	2	A:54-88 B:54-88
2	FTSZ_2	PS01135	FtsZ protein signature 2.	FTSZ_THEMA	107-128	2	A:107-128 B:107-128

(no "Exon" information available for 1W5F)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:316
 aligned with FTSZ_THEMA | O08398 from UniProtKB/Swiss-Prot  Length:351

    Alignment length:316
                                                                                                                                                                                                                                   221                                                                                                                  
                                                                                                                                                                                                                                220  |                                                                                                                  
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        |- |     229       239       249       259       269       279       289       299       309       319       329      
           FTSZ_THEMA    22 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKRGYINLD--FADIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRFPDEDKILFP 335
               SCOP domains d1w5fa1 A:22-215 Cell-division protein FtsZ                                                                                                                                                       d1w5fa2 A:216-336 Cell-division protein FtsZ                                                                             - SCOP domains
               CATH domains 1w5fA01 A:22-216  [code=3.40.50.1440, no name defined]                                                                                                                                             ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhh...eeeeeee.hhhhhhh....eeee.............hhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..eeeeeeeeeee..hhhhhhhhhhhh......hhhhh.eeeeeeee....hhhhhhhhhhhhhh......eeeeeeee.......eeeeeeeee....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------FTSZ_1  PDB: A:54-88 UniProt: 54-88------------------FTSZ_2  PDB: A:107-128----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w5f A  22 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKRGYIRLTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRFPDEDKILFP 337
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Chain B from PDB  Type:PROTEIN  Length:316
 aligned with FTSZ_THEMA | O08398 from UniProtKB/Swiss-Prot  Length:351

    Alignment length:316
                                                                                                                                                                                                                                   221                                                                                                                  
                                                                                                                                                                                                                                220  |                                                                                                                  
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        |- |     229       239       249       259       269       279       289       299       309       319       329      
           FTSZ_THEMA    22 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKRGYINLD--FADIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRFPDEDKILFP 335
               SCOP domains d1w5fb1 B:22-215 Cell-division protein FtsZ                                                                                                                                                       d1w5fb2 B:216-336 Cell-division protein FtsZ                                                                             - SCOP domains
               CATH domains 1w5fB01 B:22-216  [code=3.40.50.1440, no name defined]                                                                                                                                             ------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Tubulin-1w5fB03 B:23-195                                                                                                                                                     --------------------------------------FtsZ_C-1w5fB01 B:234-329                                                                        -------- Pfam domains (1)
           Pfam domains (2) -Tubulin-1w5fB04 B:23-195                                                                                                                                                     --------------------------------------FtsZ_C-1w5fB02 B:234-329                                                                        -------- Pfam domains (2)
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhh...eeeeeee.hhhhhhh....eeee.hhhhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..eeeeeeeeeee..hhhhhhhhhhhh......hhhhh.eeeeeeee....hhhhhhhhhhhhhhh.....eeeeeeee.......eeeeeeeee....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------FTSZ_1  PDB: B:54-88 UniProt: 54-88------------------FTSZ_2  PDB: B:107-128----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1w5f B  22 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVKGISELITKRGYIRLTSRFARIESVMKDAGAAILGIGVGKGEHRAREAAKKAMESKLIEHPVENASSIVFNITAPSNIRMEEVHEAAMIIRQNSSEDADVKFGLIFDDEVPDDEIRVIFIATRFPDEDKILFP 337
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1440, no name defined] (23)

Thermotoga maritima. Organism_taxid: 2336. (1)

1a	1w5fA01	A:22-216
1b	1w5fB01	B:22-216

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Tubulin-like (34)

Family: FtsZ_C (20)

Thermotoga maritima (1)

1a	FtsZ_C-1w5fB01	B:234-329
1b	FtsZ_C-1w5fB02	B:234-329

Family: Tubulin (34)

Thermotoga maritima (1)

2a	Tubulin-1w5fB03	B:23-195
2b	Tubulin-1w5fB04	B:23-195

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (FTSZ_THEMA | O08398)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0043093	FtsZ-dependent cytokinesis	A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0051258	protein polymerization	The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
cellular component
	GO:0032153	cell division site	The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	FTSZ_THEMA \| O08398	:	4a2a

1fsz	CRYSTAL STRUCTURE OF THE CELL-DIVISION PROTEIN FTSZ AT 2.8ARESOLUTION
1w58	FTSZ GMPCPP SOAK I213 (M. JANNASCHII)
1w59	FTSZ DIMER, EMPTY (M. JANNASCHII)
1w5a	FTSZ DIMER, MGGTP SOAK (M. JANNASCHII)
1w5b	FTSZ DIMER, GTP SOAK (M. JANNASCHII)
1w5e	FTSZ W319Y MUTANT, P1 (M. JANNASCHII)

Description

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Ligands, Modified Residues, Ions (2, 4)

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