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(-) Description

Title :  STRUCTURE OF A FUSION PROTEIN WITH A HELIX LINKER, 2ARH-3-3KAW-2.0
 
Authors :  Y. -T. Lai, T. O. Yeates
Date :  14 May 15  (Deposition) - 19 Aug 15  (Release) - 04 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.19
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Protein Design, Bionanotechnology, Protein Assembly, Symmetry, Biomaterials, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. T. Lai, L. Jiang, W. Chen, T. O. Yeates
On The Predictability Of The Orientation Of Protein Domains Joined By A Spanning Alpha-Helical Linker.
Protein Eng. Des. Sel. V. 28 491 2015
PubMed-ID: 26243886  |  Reference-DOI: 10.1093/PROTEIN/GZV035

(-) Compounds

Molecule 1 - UNCHARACTERIZED FUSION PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AQ_1966, PA2107
    Mutation: YES
    Organism Scientific: AQUIFEX AEOLICUS, PSEUDOMONAS AERUGINOSA
    Organism Taxid: 224324, 208964
    Strain: VF5, ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1PO412Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:96 , PHE A:138 , ILE A:139 , PRO A:140 , HIS A:148 , HOH A:408binding site for residue PO4 A 301
2AC2SOFTWAREARG A:31 , GLU A:65 , LEU A:143 , GLU A:145 , LYS A:149 , HOH A:401 , HOH A:407binding site for residue PO4 A 302
3AC3SOFTWAREARG B:96 , PHE B:138 , PRO B:140 , HIS B:148 , HOH B:416binding site for residue PO4 B 301
4AC4SOFTWAREARG B:74 , ASN B:75 , PHE B:78 , GLU B:103 , ASP B:104 , LYS B:105 , GLU B:106 , HOH B:408binding site for residue PO4 B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZSX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:57 -Pro A:58
2Lys B:57 -Pro B:58

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZSX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZSX)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZSX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.......eeeeeeee.....eeeeeeee..eeeeeeeee.........eeeee..hhhhhhhhh.hhhhhhhhhhhh....eeeee...hhhhhhhhhh..hhhhhhhhhhhhhh...eeeeee.........eeeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zsx A   3 KYEELLKTLENGINSEEGEIRLVRKSQGRFKEEFNFDLSLGSKPLLTLKVFLGRKPYWQPWVEVFGVNPNLRNVFFGSEAERKLYEFLSEHFGRIFVEYFEDKETTYELQKGVPPALSRLGFELLKLGYTYFRDWFIPEGLMEGGHKIQAEKPKTAEAKARHLANLKKEFEEFIGKCEDEGLIKKVKERYNFLEEEAEERCRLAAHHCIHACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVAACAPL 295
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292   


Chain B from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.......eeeeeeee.....eeeeeeee..eeeeeeeee.........eeeee..hhhhhhhhh.hhhhhhhhhhhhh...eeeee...hhhhhhhhhh..hhhhhhhhhhhhh....eeee............eeeee...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zsx B   3 KYEELLKTLENGINSEEGEIRLVRKSQGRFKEEFNFDLSLGSKPLLTLKVFLGRKPYWQPWVEVFGVNPNLRNVFFGSEAERKLYEFLSEHFGRIFVEYFEDKETTYELQKGVPPALSRLGFELLKLGYTYFRDWFIPEGLMEGGHKIQAEKPKTAEAKARHLANLKKEFEEFIGKCEDEGLIKKVKERYNFLEEEAEERCRLAAHHCIHACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVAACAPLL 296
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZSX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZSX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZSX)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZSX)

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  Q9I208_PSEAE | Q9I208
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O67778_AQUAE | O67778: 2arh 4zsv 4zsz
        Q9I208_PSEAE | Q9I208: 3kav 3kaw 4zsv 4zsz

(-) Related Entries Specified in the PDB File

4zsv 4zsz