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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MUTANT (L80M) PA2107 PROTEIN FROM PSEUDOMONAS AERUGINOSA, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PAR198
 
Authors :  F. Forouhar, H. Neely, J. Seetharaman, S. Sahdev, R. Xiao, C. Ciccosanti, E. L. Foote, L. Zhao, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  19 Oct 09  (Deposition) - 27 Oct 09  (Release) - 27 Oct 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  All Alpha-Helical Protein. , Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Forouhar, H. Neely, J. Seetharaman, S. Sahdev, R. Xiao, C. Ciccosanti, E. L. Foote, L. Zhao, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Northeast Structural Genomics Consortium Target Par198
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN PA2107
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET21
    Expression System StrainBL21(DE3)+ MAGIC
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePA2107
    MutationYES
    Organism ScientificPSEUDOMONAS AERUGINOSA
    Organism Taxid287
    StrainPAO1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3KAV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KAV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KAV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KAV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KAV)

(-) Exons   (0, 0)

(no "Exon" information available for 3KAV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with Q9I208_PSEAE | Q9I208 from UniProtKB/TrEMBL  Length:132

    Alignment length:102
                                    38        48        58        68        78        88        98       108       118       128  
         Q9I208_PSEAE    29 AAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLL 130
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3kav A  29 AAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLmERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLL 130
                                    38        48        58        68        78 |      88        98       108       118       128  
                                                                              80-MSE                                              

Chain B from PDB  Type:PROTEIN  Length:98
 aligned with Q9I208_PSEAE | Q9I208 from UniProtKB/TrEMBL  Length:132

    Alignment length:98
                                    40        50        60        70        80        90       100       110       120        
         Q9I208_PSEAE    31 QAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRP 128
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 3kav B  31 QAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLmERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRP 128
                                    40        50        60        70        80        90       100       110       120        
                                                                            80-MSE                                            

Chain C from PDB  Type:PROTEIN  Length:105
 aligned with Q9I208_PSEAE | Q9I208 from UniProtKB/TrEMBL  Length:132

    Alignment length:105
                                    36        46        56        66        76        86        96       106       116       126     
         Q9I208_PSEAE    27 GAAAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLLP 131
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 3kav C  27 GAAAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLmERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLLP 131
                                    36        46        56        66        76   |    86        96       106       116       126     
                                                                                80-MSE                                               

Chain D from PDB  Type:PROTEIN  Length:100
 aligned with Q9I208_PSEAE | Q9I208 from UniProtKB/TrEMBL  Length:132

    Alignment length:100
                                    40        50        60        70        80        90       100       110       120       130
         Q9I208_PSEAE    31 QAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLL 130
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------DUF326-3kavD01          Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------DUF326-3kavD02          Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------DUF326-3kavD03          Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------DUF326-3kavD04          Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 3kav D  31 QAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLmERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLL 130
                                    40        50        60        70        80        90       100       110       120       130
                                                                            80-MSE                                              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KAV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KAV)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
1aDUF326-3kavD01D:108-130
1bDUF326-3kavD02D:108-130
1cDUF326-3kavD03D:108-130
1dDUF326-3kavD04D:108-130

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3KAV)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9I208_PSEAE | Q9I2083kaw 4zsv 4zsx 4zsz

(-) Related Entries Specified in the PDB File

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