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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ALPHA-KINASE DOMAIN OF MYOSIN-II HEAVY CHAIN KINASE A IN COMPLEX WITH ADENOSINE
 
Authors :  Q. Ye, Z. Jia
Date :  03 May 15  (Deposition) - 19 Aug 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Aspartyl Phosphate Intermediate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Yang, Q. Ye, Z. Jia, G. P. Cote
Characterization Of The Catalytic And Nucleotide Binding Properties Of The Alpha-Kinase Domain Of Dictyostelium Myosin-Ii Heavy Chain Kinase A.
J. Biol. Chem. V. 290 23935 2015
PubMed-ID: 26260792  |  Reference-DOI: 10.1074/JBC.M115.672410

(-) Compounds

Molecule 1 - MYOSIN HEAVY CHAIN KINASE A
    Chains: A, B
    EC Number: 2.7.11.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 552-841
    Gene: MHKA, MHCKA, DDB_G0291231
    Organism Common: SLIME MOLD
    Organism Scientific: DICTYOSTELIUM DISCOIDEUM
    Organism Taxid: 44689
    Synonym: MHCK-A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 11)

Asymmetric Unit (5, 11)
No.NameCountTypeFull Name
1ADN2Ligand/IonADENOSINE
2PGE1Ligand/IonTRIETHYLENE GLYCOL
3PHD2Mod. Amino AcidASPARTYL PHOSPHATE
4PO44Ligand/IonPHOSPHATE ION
5ZN2Ligand/IonZINC ION
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1ADN1Ligand/IonADENOSINE
2PGE-1Ligand/IonTRIETHYLENE GLYCOL
3PHD1Mod. Amino AcidASPARTYL PHOSPHATE
4PO42Ligand/IonPHOSPHATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (4, 5)
No.NameCountTypeFull Name
1ADN1Ligand/IonADENOSINE
2PGE1Ligand/IonTRIETHYLENE GLYCOL
3PHD1Mod. Amino AcidASPARTYL PHOSPHATE
4PO42Ligand/IonPHOSPHATE ION
5ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:742 , HIS A:794 , CYS A:796 , CYS A:800binding site for residue ZN A 1001
2AC2SOFTWAREALA A:587 , GLU A:588 , GLY A:589 , VAL A:643 , LYS A:645 , GLU A:713 , PRO A:714 , LEU A:716 , PHE A:720 , HOH A:1137 , HOH A:1186binding site for residue ADN A 1002
3AC3SOFTWAREGLY A:589 , ALA A:590 , LEU A:591 , ARG A:592 , PHD A:766 , HOH A:1148 , HOH A:1168binding site for residue PO4 A 1003
4AC4SOFTWARELYS A:684 , ARG A:734 , SER A:735 , THR A:736 , HOH A:1108 , HOH A:1169binding site for residue PO4 A 1004
5AC5SOFTWAREHIS B:742 , HIS B:794 , CYS B:796 , CYS B:800binding site for residue ZN B 901
6AC6SOFTWAREPHE B:586 , ALA B:587 , VAL B:643 , LYS B:645 , GLU B:713 , PRO B:714 , LEU B:716 , PHE B:720 , HOH B:1004 , HOH B:1095binding site for residue ADN B 902
7AC7SOFTWAREGLY B:589 , ALA B:590 , LEU B:591 , ARG B:592 , PHD B:766 , HOH B:1026binding site for residue PO4 B 903
8AC8SOFTWARELYS B:684 , ARG B:734 , SER B:735 , THR B:736 , LYS B:795binding site for residue PO4 B 904
9AC9SOFTWAREHIS B:794 , VAL B:807 , LYS B:808 , LEU B:809 , HOH B:1005binding site for residue PGE B 905

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZME)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:617 -Pro A:618
2Phe B:617 -Pro B:618

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZME)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZME)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZME)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeee....eeeeeeeeeee.....ee...eeeeeeeeeeeee..............hhhhh.......hhhhhh....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh.......ee...eeeee...........eeeeeee......ee............hhhhhhhhhhhhhh....eee..eee..eee..eee...........hhhhhhhhhhhhh..hhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zme A 551 GISSETGEMGILWEFDPIINKWIRLSMKLKVERKPFAEGALREAYHTVSLGVGTDENYPLGTTTKLFPPIEMISPISKNNEAMTQLKNGTKFVLKLYKKQQASRELYFEDVKMQMVCRDWGNKFNQKKPPKKIEFLMSWVVELIDRSPSSNGQPILCSIEPLLVGEFKKNNSNYGAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGVDDLYTdPQIHTPDGKGFGLGNLGKAGINKFITTHKCNAVCALLDLDVKLGGVLSG 815
                                   560       570       580       590       600       610       620       630       640       653       663       673       683       693       703       713       723       733       743       753       763  |    773       783       793       803       813  
                                                                                                                            649|                                                                                                              766-PHD                                             
                                                                                                                             653                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeee....eeeeeeeeeee.....ee...eeeeeeeeeeeee..............hhhhh.......hhhhhh....eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh......ee...eeee.............eeeeee......ee............hhhhhhhhhhhhhh....eee..eee..eee..eee...........hhhhhhhhhhhhh..hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zme B 551 GISSETGEMGILWEFDPIINKWIRLSMKLKVERKPFAEGALREAYHTVSLGVGTDENYPLGTTTKLFPPIEMISPISKNNEAMTQLKNGTKFVLKLYKKASRELYFEDVKMQMVCRDWGNKFNQKKPPKKIEFLMSWVVELIDRSPSSNGQPILCSIEPLLVGEFKKNNSNYGAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGVDDLYTdPQIHTPDGKGFGLGNLGKAGINKFITTHKCNAVCALLDLDVKLG 810
                                   560       570       580       590       600       610       620       630       640       655       665       675       685       695       705       715       725       735       745       755       765|      775       785       795       805     
                                                                                                                            649|                                                                                                            766-PHD                                        
                                                                                                                             655
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZME)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZME)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZME)

(-) Gene Ontology  (23, 23)

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    Phe A:617 - Pro A:618   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MHCKA_DICDI | P42527: 3lkm 3lla 3lmh 3lmi 3pdt 4zmf 4zs4 5dyj 5e4h 5e9e

(-) Related Entries Specified in the PDB File

3lkm 3LKM CONTAINS THE SAME PROTEIN COMPLEXED WITH AMP.
3lla 3LLA CONTAINS THE SAME PROTEIN COMPLEXED WITH AMP-PCP.
3lmh 3LMH CONTAINS THE SAME PROTEIN COMPLEXED WITH ADP.
3lmi 3LMI CONTAINS THE SAME PROTEIN WITH MUTATION OF D766S COMPLEXED WITH ATP.
3pdt 3PDT CONTAINS THE SAME PROTEIN WITH C-TERMINAL TRUNCATED 32 RESIDUES.