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(-) Description

Title :  PHOSPHORYLATED ASPARTATE IN THE CRYSTAL STRUCTURE OF THE ALPHA-KINASE DOMAIN OF MYOSIN-II HEAVY CHAIN KINASE A
 
Authors :  Q. Ye, Z. Jia
Date :  04 May 15  (Deposition) - 19 Aug 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Aspartyl Phosphate Intermediate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Yang, Q. Ye, Z. Jia, G. P. Cote
Characterization Of The Catalytic And Nucleotide Binding Properties Of The Alpha-Kinase Domain Of Dictyostelium Myosin-Ii Heavy Chain Kinase A.
J. Biol. Chem. V. 290 23935 2015
PubMed-ID: 26260792  |  Reference-DOI: 10.1074/JBC.M115.672410

(-) Compounds

Molecule 1 - MYOSIN HEAVY CHAIN KINASE A
    Chains: A, B
    EC Number: 2.7.11.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 552-841
    Gene: MHKA, MHCKA, DDB_G0291231
    Organism Common: SLIME MOLD
    Organism Scientific: DICTYOSTELIUM DISCOIDEUM
    Organism Taxid: 44689
    Synonym: MHCK-A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
1AMP2Ligand/IonADENOSINE MONOPHOSPHATE
2PHD2Mod. Amino AcidASPARTYL PHOSPHATE
3PO42Ligand/IonPHOSPHATE ION
4ZN2Ligand/IonZINC ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2PHD1Mod. Amino AcidASPARTYL PHOSPHATE
3PO41Ligand/IonPHOSPHATE ION
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2PHD1Mod. Amino AcidASPARTYL PHOSPHATE
3PO41Ligand/IonPHOSPHATE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:587 , ARG A:592 , LYS A:645 , GLU A:713 , PRO A:714 , LEU A:716 , HOH A:1081binding site for residue AMP A 901
2AC2SOFTWARELYS A:684 , ARG A:734 , SER A:735 , THR A:736 , HOH A:1055binding site for residue PO4 A 902
3AC3SOFTWAREHIS A:742 , HIS A:794 , CYS A:796 , CYS A:800binding site for residue ZN A 903
4AC4SOFTWAREALA B:587 , ARG B:592 , LYS B:645 , GLU B:713 , PRO B:714 , LEU B:716 , PHD B:766 , HOH B:1066binding site for residue AMP B 901
5AC5SOFTWARELYS B:684 , ARG B:734 , SER B:735 , THR B:736 , HOH B:1023 , HOH B:1051binding site for residue PO4 B 902
6AC6SOFTWAREHIS B:742 , HIS B:794 , CYS B:796 , CYS B:800binding site for residue ZN B 903

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZMF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:617 -Pro A:618
2Phe B:617 -Pro B:618

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZMF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZMF)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZMF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee....eeeeeeeeeee.....ee...eeeeeeeeeeee.............hhhhh.......hhhhhh....eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.......ee...eeee.............eeeeee......ee...........hhhhhhhhhhhhhhh....eee..eee..eee..eee...........hhhhhhhhhhhhh..hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zmf A 552 ISSETGEMGILWEFDPIINKWIRLSMKLKVERKPFAEGALREAYHTVSLGVGTDENYPLGTKLFPPIEMISPISKNNEAMTQLKNGTKFVLKLYKKEASRELYFEDVKMQMVCRDWGNKFNQKKPPKKIEFLMSWVVELIDRSPSSNGQPILCSIEPLLVGEFKKNNSNYGAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGVDDLYTdPQIHTPDGKGFGLGNLGKAGINKFITTHKCNAVCALLDLDVK 808
                                   561       571       581       591       601       611||     623       633       643      |657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807 
                                                                                      612|                                650|                                                                                                            766-PHD                                      
                                                                                       615                                 655                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeee....eeeeeeeeeee.....ee...eeeeeeeeeeee...............hhhhh.......hhhhhh....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh.......ee...eeee...........eeeeee......ee...........hhhhhhhhhhhhhhh....eee..eee..eee..eee...........hhhhhhhhhhhhh..hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zmf B 552 ISSETGEMGILWEFDPIINKWIRLSMKLKVERKPFAEGALREAYHTVSLGVGTDENYPLGTTTKLFPPIEMISPISKNNEAMTQLKNGTKFVLKLYKKEAASRELYFEDVKMQMVCRDWGNKFNQKKPPKKIEFLMSWVVELIDRSPNGQPILCSIEPLLVGEFKKNNSNYGAVLTNRSTPQAFSHFTYELSNKQMIVVDIQGVDDLYTdPQIHTPDGKGFGLGNLGKAGINKFITTHKCNAVCALLDLDVK 808
                                   561       571       581       591       601       611       621       631       641       651|      664       674       684       694      |706       716       726       736       746       756       766       776       786       796       806  
                                                                                                                             651|                                           701|                                                           766-PHD                                      
                                                                                                                              655                                            704
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZMF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZMF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZMF)

(-) Gene Ontology  (23, 23)

Asymmetric Unit(hide GO term definitions)

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  4zmf
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  MHCKA_DICDI | P42527
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  2.7.11.7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MHCKA_DICDI | P42527: 3lkm 3lla 3lmh 3lmi 3pdt 4zme 4zs4 5dyj 5e4h 5e9e

(-) Related Entries Specified in the PDB File

3lkm 3LKM CONTAINS THE SAME PROTEIN COMPLEXED WITH AMP.
3lla 3LLA CONTAINS THE SAME PROTEIN COMPLEXED WITH AMP-PCP.
3lmh 3LMH CONTAINS THE SAME PROTEIN COMPLEXED WITH ADP.
3lmi 3LMI CONTAINS THE SAME PROTEIN WITH MUTATION OF D766S COMPLEXED WITH ATP.
3pdt 3PDT CONTAINS THE SAME PROTEIN WITH C-TERMINAL TRUNCATED 32 RESIDUES.