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(-) Description

Title :  ORF CHEMOKINE BINDING PROTEIN COMPLEXED WITH CCL2
 
Authors :  K. M. Knapp, Y. Nakatani, K. L. Krause
Date :  30 Apr 15  (Deposition) - 08 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Complex, Orf Virus Chemokine Binding Protein, Human C-C Motif Chemokine 2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. M. Counago, K. M. Knapp, Y. Nakatani, S. B. Fleming, M. Corbett, L. M. Wise, A. A. Mercer, K. L. Krause
Structures Of Orf Virus Chemokine Binding Protein In Comple With Host Chemokines Reveal Clues To Broad Binding Specificity.
Structure V. 23 1199 2015
PubMed-ID: 26095031  |  Reference-DOI: 10.1016/J.STR.2015.04.023

(-) Compounds

Molecule 1 - CHEMOKINE BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293-6E
    Expression System Common: HUMAN
    Expression System Plasmid: PTT5
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 17-286
    Organism Common: ORFV
    Organism Scientific: ORF VIRUS (STRAIN NZ2)
    Organism Taxid: 10259
 
Molecule 2 - C-C MOTIF CHEMOKINE 2
    Chains: B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293-6E
    Expression System Common: HUMAN
    Expression System Plasmid: PTT5
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 17-99
    Gene: CCL2, MCP1, SCYA2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HC11,MONOCYTE CHEMOATTRACTANT PROTEIN 1,MONOCYTE CHEMOTACTIC AND ACTIVATING FACTOR,MCAF,MONOCYTE CHEMOTACTIC PROTEIN 1,MCP-1, MONOCYTE SECRETORY PROTEIN JE,SMALL-INDUCIBLE CYTOKINE A2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:80 , GLN A:147 , ASP A:151binding site for Poly-Saccharide residues NAG A 301 through BMA A 303 bound to ASN A 80
2AC2SOFTWARETYR A:96 , GLY A:100 , ASN A:113 , ILE A:252 , LYS A:253 , GLY A:256 , MET A:261binding site for Poly-Saccharide residues NAG A 304 through BMA A 306 bound to ASN A 113

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:18 -A:227
2A:49 -A:262
3A:150 -A:213
4B:11 -B:36
5B:12 -B:52

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZK9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZK9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZK9)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZK9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eeeeeeeeeee............eeeeeeeee........eeeeeeeeee..eeeeeeeeee.....eeeeeeee......eeeeeeeee...........hhhhhhhhhhhhhhheeeeeee............eeeee....eeeeeeeeeeee.hhhhh.....eeeeee.hhhhhhhhhhhh....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zk9 A  11 SEEKANFCSTHNDEVYARFRLQMRVGVRHSPLYTPSNMCMLDIEDSVEDIEESTEKEYASTATGEAAGVNVSVALVGEGVSIPFSYIGLGFNPSLEDSYLYVNVSSRAPWVKQTSDLSANGGWGIKQVLEKELLAIQIGCDNQKFPEADIDFSLLVDPRCVTSVDLHVELRDACIDYKQESPLSLKGKYGDGELVKKEIKDVGKNHNMCSLNLNPG 269
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150      |203       213       223       233       243       253       263      
                                                                                                                                                                            157|                                                                    
                                                                                                                                                                             201                                                                    


Chain B from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......hhh.eeeeeee........eeeeee....eeee...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 4zk9 B   9 VTCCYNFTNRKISVQRLASYRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDK  69
                                    18        28        38        48        58        68
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZK9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZK9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZK9)

(-) Gene Ontology  (113, 113)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CCL2_HUMAN | P13500: 1dok 1dol 1dom 1don 1mca 1ml0 2bdn 2nz1 3ifd 4dn4 4r8i
UniProtKB/TrEMBL
        Q2F862_ORFV | Q2F862: 4p5i 4zkb 4zkc

(-) Related Entries Specified in the PDB File

4zkb 4zkc