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(-) Description

Title :  CRYSTAL STRUCTURE OF DEATH EFFECTOR DOMAIN OF CASPASE8 IN HOMO SAPIENS
 
Authors :  C. Shen, T. Wang, J. Quan
Date :  15 Apr 15  (Deposition) - 01 Jul 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Death Effector Domain, Caspase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Shen, H. Yue, J. Pei, X. Guo, T. Wang, J. M. Quan
Crystal Structure Of The Death Effector Domains Of Caspase-
Biochem. Biophys. Res. Commun. V. 463 297 2015
PubMed-ID: 26003730  |  Reference-DOI: 10.1016/J.BBRC.2015.05.054

(-) Compounds

Molecule 1 - CASPASE-8
    Chains: A, B
    EC Number: 3.4.22.61
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A(+)
    Expression System Strain: ROSETTA DE3 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CASP8, MCH5
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CASP-8,APOPTOTIC CYSTEINE PROTEASE,APOPTOTIC PROTEASE MCH-5, CAP4,FADD-HOMOLOGOUS ICE/CED-3-LIKE PROTEASE,FADD-LIKE ICE,FLICE,ICE- LIKE APOPTOTIC PROTEASE 5,MORT1-ASSOCIATED CED-3 HOMOLOG,MACH

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZBW)

(-) Sites  (0, 0)

(no "Site" information available for 4ZBW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZBW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZBW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZBW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZBW)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZBW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh....hhhhhhhhhhhh.......hhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zbw A   2 DFSRNLYDIGEQLDSEDLASLKFLSLDYIPQRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELLFRINRLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRSFKALLQEEDSKCKLDDDMNLLDIFIEMEKRVILGEGKLDILKRVCAQINKSLLKIINDYEEFSKE 184
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181   


Chain B from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh...hhhhhhhhhhhh.......hhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.......hhhhhhhhh..hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zbw B   2 DFSRNLYDIGEQLDSEDLASLKFLSLDYIPQRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELLFRINRLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRSFKALLQEEDSKCKLDDDMNLLDIFIEMEKRVILGEGKLDILKRVCAQINKSLLKIINDYEEFSKE 184
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZBW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZBW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZBW)

(-) Gene Ontology  (70, 70)

Asymmetric/Biological Unit(hide GO term definitions)

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  4zbw
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  CASP8_HUMAN | Q14790
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CASP8_HUMAN | Q14790: 1f9e 1i4e 1qdu 1qtn 2c2z 2fun 2k7z 2y1l 3h11 3kjn 3kjq 4jj7 4prz 4ps1 5jqe 5l08

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZBW)