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(-) Description

Title :  CRYSTAL STRUCTURE OF CASPASE8 TDED
 
Authors :  T. Fu, Y. Li, A. Lu, H. Wu
Date :  04 May 16  (Deposition) - 26 Oct 16  (Release) - 26 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.16
Chains :  Asym./Biol. Unit :  A
Keywords :  Apoptosis, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Fu, Y. Li
Crystal Structure Of Caspase8 Ded
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUGAR ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN,CASPASE-8 CHIMERA
    Chains: A
    EC Number: 3.4.22.61
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDB-HIS-MBP
    Expression System Strain: BL21(DE3) RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MALE, AC066_14980, CASP8, MCH5
    Organism Common: HUMAN
    Organism Scientific: ESCHERICHIA COLI, HOMO SAPIENS
    Organism Taxid: 562
    Synonym: CASP-8,APOPTOTIC CYSTEINE PROTEASE,APOPTOTIC PROTEASE MCH-5, CAP4,FADD-HOMOLOGOUS ICE/CED-3-LIKE PROTEASE,FADD-LIKE ICE,FLICE,ICE- LIKE APOPTOTIC PROTEASE 5,MORT1-ASSOCIATED CED-3 HOMOLOG,MACH

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JQE)

(-) Sites  (0, 0)

(no "Site" information available for 5JQE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JQE)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:194 -Val A:195
2Ser A:1129 -Lys A:1130

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JQE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JQE)

(-) Exons   (0, 0)

(no "Exon" information available for 5JQE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:544
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.....hhhhhhhhhhhhhh.....eeee...hhhhhhhhhhh......eeeeehhhhhhhhhh........hhhhhhhhhhhhhh..ee..ee.eeeeeee..eeeee...........hhhhhhhhhhhhhh.eee.....hhhhhhhhhhhh.....eee..eee.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..eeeeeehhhhhhhhhh....eeee...ee..ee...eeeeeeeee.....hhhhhhhhhhh...hhhhhhhhhhhh...ee.hhhhhhhhhh..hhhhhhhhhhh.ee...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhh.......hhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.......hhhhhhhhhhhhh.hhhhhhhhhhh..............hhhhhhhhhhh........hhhhhhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jqe A   18 KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALAAAQTHMDFSRNLYDIGEQLDSEDLASLKFLSLDYIPQRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELLFRINRLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRSFKGGLQEEISKCKLDDDMNLLDIFIEMEKRVILGEGKLDILKRVCAQINKSLLKIINDYEEFS 1182
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377 ||   1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178    
                                                                                                                                                                                                                                                                                                                                                                                                   379|                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                   1001
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JQE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JQE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JQE)

(-) Gene Ontology  (70, 70)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5jqe)
 
  Cis Peptide Bonds
    Gly A:194 - Val A:195   [ RasMol ]  
    Ser A:1129 - Lys A:1130   [ RasMol ]  
 

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  5jqe
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  CASP8_HUMAN | Q14790
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CASP8_HUMAN | Q14790: 1f9e 1i4e 1qdu 1qtn 2c2z 2fun 2k7z 2y1l 3h11 3kjn 3kjq 4jj7 4prz 4ps1 4zbw 5l08

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JQE)