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(-) Description

Title :  CRYSTAL STRUCTURE OF LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE ISOFORM A COMPLEXED WITH PHENYLMETHANESULFONIC ACID
 
Authors :  D. B. B. Trivella, E. M. B. Fonseca, V. Scorsato, M. P. Dias, R. Aparicio
Date :  10 Apr 15  (Deposition) - 15 Jul 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Tyrosine Phosphatase, Hydrolase, Protein-Ligand Complex, Phenylmethanesulfonic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. M. Fonseca, D. B. Trivella, V. Scorsato, M. P. Dias, N. L. Bazzo, K. R. Mandapati, F. L. De Oliveira, C. V. Ferreira-Halder, R. A. Pilli P. C. Miranda, R. Aparicio
Crystal Structures Of The Apo Form And A Complex Of Human Lmw-Ptp With A Phosphonic Acid Provide New Evidence Of A Secondary Site Potentially Related To The Anchorage Of Natural Substrates.
Bioorg. Med. Chem. V. 23 4462 2015
PubMed-ID: 26117648  |  Reference-DOI: 10.1016/J.BMC.2015.06.017

(-) Compounds

Molecule 1 - LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE
    ChainsA
    EC Number3.1.3.48, 3.1.3.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21DE3
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneACP1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymLMW-PTPASE,ADIPOCYTE ACID PHOSPHATASE,LOW MOLECULAR WEIGHT CYTOSOLIC ACID PHOSPHATASE,RED CELL ACID PHOSPHATASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PMS1Ligand/IonPHENYLMETHANESULFONIC ACID
3SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:49 , LYS A:64 , ASP A:92 , GLU A:93 , SER A:94 , ARG A:97binding site for residue GOL A 301
2AC2SOFTWAREARG A:101 , LYS A:102 , GLN A:105 , HOH A:407 , HOH A:454binding site for residue SO4 A 302
3AC3SOFTWAREARG A:27 , TRP A:39 , ARG A:40 , VAL A:41 , HOH A:428 , HOH A:452binding site for residue SO4 A 303
4AC4SOFTWARECYS A:12 , LEU A:13 , GLY A:14 , ASN A:15 , ILE A:16 , CYS A:17 , ARG A:18 , ARG A:97 , ASP A:129 , HOH A:401binding site for residue PMS A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z9A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z9A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z9A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z9A)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z9A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhhhhhhhhhh.hhh.eeeeeee..........hhhhhhhhhhh...........hhhhhhhh.eeee.hhhhhhhhhhhhh.......eeee.hhhh.............hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z9a A   4 ATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 157
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153    

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z9A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z9A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z9A)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPAC_HUMAN | P246661xww 3n8i 4z99 4z9b 5jnr 5jns 5jnt 5kqg 5kql 5kqm 5kqp 5pnt

(-) Related Entries Specified in the PDB File

3n8i 3N8I CONTAINS THE SAME PROTEIN IN COMPLEX WITH NLA IN A SECONDARY BINDING SITE
4z99
4z9b
5pnt 5PNT CONTAINS THE SAME PROTEIN IN COMPLEX WITH MES