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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LECTIN DOMAIN OF PAPG FROM E. COLI BI47 IN COMPLEX WITH SSEA4 IN SPACE GROUP P21
 
Authors :  R. P. Jakob, G. Navarra, P. Zihlmann, K. Stangier, R. C. Preston, S. Rabb T. Maier, B. Ernst
Date :  31 Mar 15  (Deposition) - 13 Apr 16  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Upec, Urinary Tract Infection, Fimbrial Adhesin, Adhesin, Type I Pili, Papg, Carbohydrate Binding, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Navarra, P. Zihlmann, R. P. Jakob, K. Stangier, R. C. Preston, S. Rabbani, T. Maier, B. Ernst
An Unexpected Way Nature Improves Solvation Entropy
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PAPG, LECTIN DOMAIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-22B
    Expression System Taxid: 469008
    Expression System Variant: ADA494
    Fragment: RESIDUES 20-216
    Gene: G801_04654, G801_04690
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 8)

Asymmetric/Biological Unit (6, 8)
No.NameCountTypeFull Name
1BGC1Ligand/IonBETA-D-GLUCOSE
2GAL2Ligand/IonBETA-D-GALACTOSE
3GLA1Ligand/IonALPHA D-GALACTOSE
4NGA1Ligand/IonN-ACETYL-D-GALACTOSAMINE
5SIA1Ligand/IonO-SIALIC ACID
6ZN2Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:48 , HIS A:83 , HOH A:371 , HOH A:391 , HOH A:445binding site for residue ZN A 207
2AC2SOFTWAREASP A:143binding site for residue ZN A 208
3AC3SOFTWAREGLU A:59 , SER A:89 , GLU A:91 , LYS A:103 , GLY A:104 , TRP A:107 , ARG A:170 , LYS A:172 , HOH A:306 , HOH A:310 , HOH A:355 , HOH A:362 , HOH A:394 , HOH A:403 , HOH A:405 , HOH A:423 , HOH A:456binding site for Poly-Saccharide residues SIA A 201 through BGC A 206

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:44 -A:118

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z3F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z3F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z3F)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z3F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..eeeeeeeee......eeee....eeeeeeeeee....ee.....eeeeeeeeeeee.eee.....eeeeeeee....eee......eeeeeeeeeeeeee...ee.......eeee......eeeeee.......eeeeeeeeeeeeeeeeee.........hhhhhh.....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3f A  -1 MAWNNIVFYSLGDVNSYQGGNVVITQRPQFITSWRPGIATVTWNQCNGPEFADGSWAYYREYIAWVVFPKKVMTKNGYPLFIEVHNKGSWSEENTGDNDSYFFLKGYKWDQRAFDTANLCQKPGETTRLTEKFDDIIFKVALPADLPLGDYSVTIPYTSGIQRHFASYLGARFKIPYNVAKTLPRENEMLFLFKNIG 195
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z3F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z3F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z3F)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4Z3F)

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  4z3f
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  A0A182DW20_E | A0A182DW20
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A182DW20_E | A0A182DW20: 4z3e 4z3g 4z3h 4z3i 4z3j

(-) Related Entries Specified in the PDB File

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