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(-) Description

Title :  HU38-19BP
 
Authors :  M. Hammel, F. E. Reyes, R. Parpana, J. A. Tainer, S. Adhya, D. Amlanjyoti
Date :  24 Feb 15  (Deposition) - 29 Jun 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (3x)
Keywords :  Hu-Dna, Transcription, Pathogenicity, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Hammel, F. E. Reyes, R. Parpana, J. A. Tainer, S. Adhya, D. Amlanjyot
Structure Of Huaa With Dna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA-BINDING PROTEIN HU-ALPHA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HUPA, B4000, JW3964
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: HU-2,NS2
 
Molecule 2 - SYNTHETIC DNA STRAND
    Chains: C
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synthetic: YES
 
Molecule 3 - SYNTHETIC DNA STRAND
    Chains: D
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (3x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4YF0)

(-) Sites  (0, 0)

(no "Site" information available for 4YF0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YF0)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:73 -Ala A:74
2Pro B:63 -Gln B:64

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:76
                                                                                                           
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...eee...eeeeee........eeeeeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                  4yf0 A  1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKKGDALQLVGFGTFKVNHRAERAANVPAFVSGKALKDAVK 90
                                    10        20        30        40        50       |74        84      
                                                                                    58|                 
                                                                                     73                 


Chain B from PDB  Type:PROTEIN  Length:89
                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...eee...eeeeeeee................eeeeeeeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  4yf0 B  0 HMNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKKGDALQLVGFGTFKVNHRAERTGPQTGKEIKIAAANVPAFVSGKALKDAVK 90
                                     9        19        29        39        49        59||      71        81         
                                                                                       60|                           
                                                                                        63                           


Chain C from PDB  Type:DNA  Length:11
                                          
                  4yf0 C  1 CCCTTTTCCCC 11
                                    10 


Chain D from PDB  Type:DNA  Length:12
                                           
                  4yf0 D  1 TTTTTTAATTTT 12
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YF0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YF0)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (10, 12)

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  Cis Peptide Bonds
    Ala A:73 - Ala A:74   [ RasMol ]  
    Pro B:63 - Gln B:64   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DBHA_ECO57 | P0ACF2: 4yew 4yex 4yey 4yfh 4yft
        DBHA_ECOLI | P0ACF0: 1mul 2o97 4yew 4yex 4yey 4yfh 4yft

(-) Related Entries Specified in the PDB File

4yew 4yex 4yey 4yfh 4yft