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(-) Description

Title :  STRUCTURE OF FTMOX1 APO WITH METAL IRON
 
Authors :  W. Yan, Y. Zhang
Date :  12 Feb 15  (Deposition) - 04 Nov 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apo, Ftmox1, Iron, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Yan, H. Song, F. Song, Y. Guo, C. H. Wu, A. Sae Her, Y. Pu, S. Wang, N. Naowarojna, A. Weitz, M. P. Hendrich, C. E. Costello, L. Zhang, P. Liu, Y. Jessie Zhang
Endoperoxide Formation By An Alpha-Ketoglutarate-Dependent Mononuclear Non-Haem Iron Enzyme.
Nature V. 527 539 2015
PubMed-ID: 26524521  |  Reference-DOI: 10.1038/NATURE15519

(-) Compounds

Molecule 1 - VERRUCULOGEN SYNTHASE
    Chains: A, B
    EC Number: 1.14.11.38
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: FTMOX1, FTMF, AFUA_8G00230
    Organism Scientific: NEOSARTORYA FUMIGATA
    Organism Taxid: 330879
    Strain: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100
    Synonym: FUMITREMORGIN BIOSYNTHESIS PROTEIN F

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1CO1Ligand/IonCOBALT (II) ION
2FE22Ligand/IonFE (II) ION
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:133 , ASP A:135 , HIS A:209 , HOH A:640 , HOH A:641 , HOH A:774binding site for residue FE2 A 501
2AC2SOFTWAREPRO A:62 , LYS A:63 , GLY A:64 , ARG A:66 , LYS B:280binding site for residue SO4 A 502
3AC3SOFTWAREILE A:123 , GLY A:211 , ARG A:222 , VAL A:224 , HOH A:605 , HOH A:748binding site for residue SO4 A 503
4AC4SOFTWAREHIS B:133 , ASP B:135 , HIS B:209 , HOH B:649 , HOH B:650 , HOH B:765binding site for residue FE2 B 501
5AC5SOFTWAREGLU B:186 , ASP B:188 , HOH B:626binding site for residue CO B 502
6AC6SOFTWAREPRO A:269 , ILE A:271 , VAL A:272 , ASP B:135 , ASP B:136 , ALA B:137 , THR B:138 , TYR B:228 , HOH B:733binding site for residue MES B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y5T)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:268 -Pro A:269
2Asp B:268 -Pro B:269

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y5T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y5T)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y5T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee...hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhh.........hhhhh.....ee.hhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeeeeeee...............hhhhhhh.......eeeeeee..........eee..hhhhh......hhhhheee......eeeee....ee...........eeeeeeeeee............hhhhhhh.hhhhhhhh................ee..eehhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y5t A   8 DSKPQLQRLAADADVDRMCRLLEEDGAFILKGLLPFDVVESFNRELDVQMAIPPPKGERLLADKYPPHFKYVPNVATTCPTFRNTVLINPVIHAICEAYFQRTGDYWLSAAFLREIESGMPAQPFHRDDATHPLMHYQPLEAPPVSLSVIFPLTEFTEENGATEVILGSHRWTEVGTPERDQAVLATMDPGDVLIVRQRVVHAGGGNRTTAGKPRRVVLAYFNSVQLTPFETYRTMPREMVESMTVLGQRMLGWRTMKPSDPNIVGINLIDDKRLENVLQLKAADSPAL 296
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287         


Chain B from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhh.........hhhhh....eee.hhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeeeeeee...............hhhhhhh.......eeeeeee..........eee..hhhhh......hhhhheee......eeeee....ee...........eeeeeeeeee............hhhhhhh.hhhhhhhh................ee..eehhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y5t B  10 KPQLQRLAADADVDRMCRLLEEDGAFILKGLLPFDVVESFNRELDVQMAIPPPKGERLLADKYPPHFKYVPNVATTCPTFRNTVLINPVIHAICEAYFQRTGDYWLSAAFLREIESGMPAQPFHRDDATHPLMHYQPLEAPPVSLSVIFPLTEFTEENGATEVILGSHRWTEVGTPERDQAVLATMDPGDVLIVRQRVVHAGGGNRTTAGKPRRVVLAYFNSVQLTPFETYRTMPREMVESMTVLGQRMLGWRTMKPSDPNIVGINLIDDKRLENVLQLKAADSP 294
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y5T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y5T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y5T)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTMF_ASPFU | Q4WAW9: 4y5s 4zon

(-) Related Entries Specified in the PDB File

4y5s