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(-) Description

Title :  STRUCTURE OF FTMOX1 WITH A-KETOGLUTARATE AS CO-SUBSTRATE
 
Authors :  W. Yan, Y. Zhang
Date :  12 Feb 15  (Deposition) - 04 Nov 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Complex, A-Ketoglutarate, Ftmox1, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Yan, H. Song, F. Song, Y. Guo, C. H. Wu, A. Sae Her, Y. Pu, S. Wang, N. Naowarojna, A. Weitz, M. P. Hendrich, C. E. Costello, L. Zhang, P. Liu, Y. Jessie Zhang
Endoperoxide Formation By An Alpha-Ketoglutarate-Dependent Mononuclear Non-Haem Iron Enzyme.
Nature V. 527 539 2015
PubMed-ID: 26524521  |  Reference-DOI: 10.1038/NATURE15519

(-) Compounds

Molecule 1 - VERRUCULOGEN SYNTHASE
    Chains: A, B
    EC Number: 1.14.11.38
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: FTMOX1, FTMF, AFUA_8G00230
    Organism Scientific: NEOSARTORYA FUMIGATA
    Organism Taxid: 330879
    Strain: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100
    Synonym: FUMITREMORGIN BIOSYNTHESIS PROTEIN F

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1AKG2Ligand/Ion2-OXOGLUTARIC ACID
2CO1Ligand/IonCOBALT (II) ION
3FE22Ligand/IonFE (II) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:130 , HIS A:133 , ASP A:135 , THR A:170 , HIS A:209 , GLY A:211 , ARG A:222 , LEU A:226 , TYR A:228 , FE2 A:402 , HOH A:507binding site for residue AKG A 401
2AC2SOFTWAREHIS A:133 , ASP A:135 , HIS A:209 , AKG A:401 , HOH A:507binding site for residue FE2 A 402
3AC3SOFTWAREGLN B:130 , HIS B:133 , ASP B:135 , THR B:170 , HIS B:209 , GLY B:211 , ARG B:222 , TYR B:228 , FE2 B:402 , HOH B:524binding site for residue AKG B 401
4AC4SOFTWAREHIS B:133 , ASP B:135 , HIS B:209 , AKG B:401 , HOH B:524binding site for residue FE2 B 402
5AC5SOFTWAREGLU B:186 , ASP B:188binding site for residue CO B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y5S)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:268 -Pro A:269
2Asp B:268 -Pro B:269

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y5S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y5S)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y5S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee...hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhh........hhhhh.....ee.hhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeeeeeee...............hhhhhhh.......eeeeeee...........ee..hhhhh......hhhhhee.......eeee.....ee...........eeeeeeeeee............hhhhhhhhhhhhhhhh................ee..eehhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y5s A   8 DSKPQLQRLAADADVDRMCRLLEEDGAFILKGLLPFDVVESFNRELDVQMAIPPPKGERLLADKYPPHFKYVPNVATTCPTFRNTVLINPVIHAICEAYFQRTGDYWLSAAFLREIESGMPAQPFHRDDATHPLMHYQPLEAPPVSLSVIFPLTEFTEENGATEVILGSHRWTEVGTPERDQAVLATMDPGDVLIVRQRVVHAGGGNRTTAGKPRRVVLAYFNSVQLTPFETYRTMPREMVESMTVLGQRMLGWRTMKPSDPNIVGINLIDDKRLENVLQLKAADSPAL 296
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287         


Chain B from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...hhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhh.........hhhhh....eee.hhhhhhhhhhhh...hhhhhhhhhhhh.....eeeeeeeeeee...............hhhhhhh.......eeeeeee...........ee..hhhhh......hhhhhee.......eeee.....ee...........eeeeeeeeee............hhhhhhh.hhhhhhhh................ee..eehhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y5s B  10 KPQLQRLAADADVDRMCRLLEEDGAFILKGLLPFDVVESFNRELDVQMAIPPPKGERLLADKYPPHFKYVPNVATTCPTFRNTVLINPVIHAICEAYFQRTGDYWLSAAFLREIESGMPAQPFHRDDATHPLMHYQPLEAPPVSLSVIFPLTEFTEENGATEVILGSHRWTEVGTPERDQAVLATMDPGDVLIVRQRVVHAGGGNRTTAGKPRRVVLAYFNSVQLTPFETYRTMPREMVESMTVLGQRMLGWRTMKPSDPNIVGINLIDDKRLENVLQLKAADSP 294
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y5S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y5S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y5S)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTMF_ASPFU | Q4WAW9: 4y5t 4zon

(-) Related Entries Specified in the PDB File

4y5t