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(-) Description

Title :  STRUCTURE OF BRCA1 BRCT DOMAINS IN COMPLEX WITH ABRAXAS SINGLE PHOSPHORYLATED PEPTIDE
 
Authors :  Q. Wu, T. L. Blundell
Date :  09 Feb 15  (Deposition) - 27 Jan 16  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Damage Response, Brct, Phosphopeptide, Ligase-Peptide Complex, Antitumor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Wu, A. Paul, D. Su, S. Mehmood, T. K. Foo, T. Ochi, E. L. Bunting, B. Xia C. V. Robinson, B. Wang, T. L. Blundell
Structure Of Brca1-Brct/Abraxas Complex Reveals Phosphorylation-Dependent Brct Dimerization At Dna Damage Sites.
Mol. Cell V. 61 434 2016
PubMed-ID: 26778126  |  Reference-DOI: 10.1016/J.MOLCEL.2015.12.017

(-) Compounds

Molecule 1 - BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN
    Chains: A
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1646-1859
    Gene: BRCA1, RNF53
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RING FINGER PROTEIN 53
 
Molecule 2 - BRCA1-A COMPLEX SUBUNIT ABRAXAS
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 403-409
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: COILED-COIL DOMAIN-CONTAINING PROTEIN 98,PROTEIN FAM175A
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (0, 0)

(no "Site" information available for 4Y2G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y2G)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:1770 -Pro A:1771

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y2G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y2G)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y2G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhhhhhhhhhh.ee.........eeee......ee.eehhhhhhhhh..eeeehhhhhhhhhh....hhhhhh..ee.......hhhhhhhhh........eeeee.......hhhhhhhhhhhh..ee..hhhhh......eeeeeehhhhh...hhhhhhhhh....eeehhhhhhhhhhh...hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4y2g A 1646 VNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIP 1859
                                  1655      1665      1675      1685      1695      1705      1715      1725      1735      1745      1755      1765      1775      1785      1795      1805      1815      1825      1835      1845      1855    


Chain B from PDB  Type:PROTEIN  Length:7
                                        
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author .....ee Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                4y2g B  403 YSRsPTF  409
                               |   
                             406-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y2G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y2G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y2G)

(-) Gene Ontology  (101, 112)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:1770 - Pro A:1771   [ RasMol ]  
 

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  F175A_HUMAN | Q6UWZ7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRCA1_HUMAN | P38398: 1jm7 1jnx 1n5o 1oqa 1t15 1t29 1t2u 1t2v 1y98 2ing 3coj 3k0h 3k0k 3k15 3k16 3pxa 3pxb 3pxc 3pxd 3pxe 4ifi 4igk 4jlu 4ofb 4u4a 4y18
        F175A_HUMAN | Q6UWZ7: 4jlu 4u4a 4y18

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4Y2G)