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(-) Description

Title :  CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM PROPIONATE KINASE A88G MUTANT, IN COMPLEX WITH AMPPNP AND PROPIONATE
 
Authors :  A. M. Murthy, S. Mathivanan, S. Chittori, H. S. Savithri, M. R. N. Murthy
Date :  04 Jan 15  (Deposition) - 23 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Kinase, Tdcd Mutant, Amppnp, Propionate (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. M. V. Murthy, S. Mathivanan, S. Chittori, H. S. Savithri, M. R. N. Murthy
Structures Of Substrate- And Nucleotide-Bound Propionate Kinase From Salmonella Typhimurium: Substrate Specificity And Phosphate-Transfer Mechanism
Acta Crystallogr. , Sect. D V. 71 1640 2015
PubMed-ID: 26249345  |  Reference-DOI: 10.1107/S1399004715009992

(-) Compounds

Molecule 1 - PROPIONATE KINASE
    ChainsA
    EC Number2.7.2.15
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPRSET C PRSET C PRSETPRSET PRSET C
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 4-397
    GeneTDCD, OXD-2, STM3242
    MutationYES
    Organism ScientificSALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720)
    Organism Taxid99287
    StrainLT2 / SGSC1412 / ATCC 700720

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL1Ligand/IonGLYCEROL
3PPI1Ligand/IonPROPANOIC ACID
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (4, 8)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL2Ligand/IonGLYCEROL
3PPI2Ligand/IonPROPANOIC ACID
4SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:180 , ARG A:184binding site for residue SO4 A 401
2AC2SOFTWAREARG A:306 , HIS A:307 , HOH A:549binding site for residue GOL A 402
3AC3SOFTWAREHIS A:175 , HIS A:203 , GLY A:205 , ASN A:206 , GLY A:207 , ASP A:278 , LEU A:279 , ARG A:280 , GLU A:283 , GLY A:325 , GLY A:326 , ILE A:327 , ASN A:330 , PPI A:404 , HOH A:559binding site for residue ANP A 403
4AC4SOFTWAREHIS A:175 , GLY A:207 , MET A:223 , ARG A:236 , ANP A:403 , HOH A:526binding site for residue PPI A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XH5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XH5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XH5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XH5)

(-) Exons   (0, 0)

(no "Exon" information available for 4XH5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:392
                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeee.....eeeeeeee......ee......ee....hhhhhhhhhhhhhhhh.hhh.eeeeeeee..........ee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhh.......eeeeeee...eeeeeee..eeeee...................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.ee........eeee...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xh5 A   4 FPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMTENAFLSINDKPINLAHSNYEDALKAIAFELEKRDLTDSVALIGHRIGHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLPWEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKDSGLIVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLIRQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHLGNVKA 397
                                    13        23        33    ||  44   ||   55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395  
                                                             38|      48|                                                                                                                                                                                                                                                                                                                                                           
                                                              40       50                                                                                                                                                                                                                                                                                                                                                           

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XH5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XH5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XH5)

(-) Gene Ontology  (12, 12)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TDCD_SALTY | O069611x3m 1x3n 2e1y 2e1z 2e20 4fwk 4fwl 4fwm 4fwn 4fwo 4fwp 4fwq 4fwr 4fws 4xh1 4xh4

(-) Related Entries Specified in the PDB File

4xh1 4xh4