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(-) Description

Title :  CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM PROPIONATE KINASE IN COMPLEX WITH AMPPNP AND PROPIONATE
 
Authors :  A. M. V. Murthy, S. Mathivanan, S. Chittori, H. S. Savithri, M. R. N. Murt
Date :  04 Jan 15  (Deposition) - 19 Aug 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Kinase, Tdcd, Amppnp, Propionate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. V. Murthy, S. Mathivanan, S. Chittori, H. S. Savithri, M. R. N. Murthy
Structures Of Substrate- And Nucleotide-Bound Propionate Kinase From Salmonella Typhimurium: Substrate Specificity And Phosphate-Transfer Mechanism
Acta Crystallogr. , Sect. D V. 71 1640 2015
PubMed-ID: 26249345  |  Reference-DOI: 10.1107/S1399004715009992

(-) Compounds

Molecule 1 - PROPIONATE KINASE
    Chains: A
    EC Number: 2.7.2.15
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PRSET C PRSET C PRSETPRSET PRSET C
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 4-397
    Gene: TDCD, OXD-2, STM3242
    Mutation: YES
    Organism Scientific: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720)
    Organism Taxid: 99287
    Strain: LT2 / SGSC1412 / ATCC 700720

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL2Ligand/IonGLYCEROL
3PPI1Ligand/IonPROPANOIC ACID
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2GOL4Ligand/IonGLYCEROL
3PPI2Ligand/IonPROPANOIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:306 , HIS A:307binding site for residue GOL A 501
2AC2SOFTWARELEU A:150 , TYR A:155 , HOH A:601 , HOH A:661binding site for residue GOL A 502
3AC3SOFTWAREARG A:86 , ASP A:143 , GLY A:207 , PRO A:227 , ARG A:236binding site for residue PPI A 503
4AC4SOFTWAREHIS A:175 , HIS A:203 , GLY A:205 , ASN A:206 , GLY A:207 , ASP A:278 , LEU A:279 , GLY A:325 , GLY A:326 , ILE A:327 , ASN A:330binding site for residue ANP A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XH1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XH1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XH1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XH1)

(-) Exons   (0, 0)

(no "Exon" information available for 4XH1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eeeeeee.....eeeeeeee.....eeee......eee...hhhhhhhhhhhhhhhh.hhh.eeeeeeee..........ee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhh.......eeeeeee...eeeeeee..eeeee...................hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.ee........eeee...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xh1 A   4 FPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMTENAFLSINGDKPINLAHSNYEDALKAIAFELEKRDLTDSVALIGHRIAHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLPWEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKDSGLIVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLIRQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHLGNVKA 397
                                    13        23        33    ||  44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394   
                                                             38|                                                                                                                                                                                                                                                                                                                                                                     
                                                              40
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XH1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XH1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XH1)

(-) Gene Ontology  (12, 12)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TDCD_SALTY | O06961: 1x3m 1x3n 2e1y 2e1z 2e20 4fwk 4fwl 4fwm 4fwn 4fwo 4fwp 4fwq 4fwr 4fws 4xh4 4xh5

(-) Related Entries Specified in the PDB File

4xh4 4xh5