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(-) Description

Title :  CRYSTAL STRUCTURE OF BAMB AND BAMA P3-5 COMPLEX FROM E.COLI
 
Authors :  Z. Chen, L. H. Zhan, C. Dong, Z. Q. Gao, Y. H. Dong
Date :  30 Dec 14  (Deposition) - 20 Jan 16  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Outer Member Protein, Protein Binding-Membrane Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Chen, L. H. Zhan, H. F. Hou, Z. Q. Gao, J. H. Xu, C. Dong, Y. H. Dong
Structural Basis For The Interaction Of Bamb With The Potra3-4 Domains Of Bama.
Acta Crystallogr D Struct V. 72 236 2016 Biol
PubMed-ID: 26894671  |  Reference-DOI: 10.1107/S2059798315024729

(-) Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: BAMB, YFGL, B2512, JW2496
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
 
Molecule 2 - OUTER MEMBRANE PROTEIN ASSEMBLY FACTOR BAMA
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 175-420
    Gene: BAMA, YAET, YZZN, YZZY, B0177, JW0172
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: OMP85

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:194 , GLY A:196 , ASP A:212 , ASP A:246 , ASP A:248 , HOH A:558binding site for residue CA A 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XGA)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Glu A:107 -Pro A:108
2Gly A:114 -Val A:115
3Gly A:265 -Asn A:266

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XGA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XGA)

(-) Exons   (0, 0)

(no "Exon" information available for 4XGA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:347
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee...............eee..eeeee....eeeeee.....eeeeee.......eeeeeeee..eeeeee...eeeeee.....eeeeee.........eee..eeeee....eeeeee.....eeeeee......ee......eee..eeeee....eeeeee....eeeeeee.............eee..eeeee.....eeeee.....eeeee........eee..eeeee.....eeeee.....eeeee...........eee..eeeee....eeeeee.....eeeeee..........eee..eeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xga A  32 MSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR 392
                                    41        51        61        71        81        91       108       118       128       138       148       158       168       178       188       198       208       218       228    || 245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       
                                                                                              99|                                                                                                                           233|                                                                                                                                                       
                                                                                              107                                                                                                                            241                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhh...................hhhhhhhhhhhhhhhhhh......eeeeeeeee.....eeeeeeeee.....eeeeeeeeee...hhhhhhh..........hhhhhhhhhhhhhhhhhh......eeeeeeeee....eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xga B 175 AEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFY 348
                                   184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XGA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XGA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XGA)

(-) Gene Ontology  (11, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  BAMB_ECOLI | P77774
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAMA_ECOLI | P0A940: 2qcz 2qdf 2v9h 3efc 3og5 3q6b 4c4v 4n75 4pk1 5ayw 5d0o 5d0q 5ekq 5ljo
        BAMB_ECOLI | P77774: 2yh3 2yms 3p1l 3prw 3q7m 3q7n 3q7o 4pk1 5ayw 5d0o 5ljo

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4XGA)