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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS CARD IN COMPLEX WITH THE THERMUS AQUATICUS RNA POLYMERASE BETA1 DOMAIN
 
Authors :  J. Chen, B. Bae, E. A. Campbell, S. A. Darst
Date :  15 Dec 14  (Deposition) - 16 Sep 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Bae, J. Chen, E. Davis, K. Leon, S. A. Darst, E. A. Campbell
Card Uses A Minor Groove Wedge Mechanism To Stabilize The Rna Polymerase Open Promoter Complex.
Elife V. 4 2015
PubMed-ID: 26349034  |  Reference-DOI: 10.7554/ELIFE.08505

(-) Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA DOMAIN 1
    Chains: A
    EC Number: 2.7.7.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RPOB
    Organism Scientific: THERMUS AQUATICUS
    Organism Taxid: 271
    Other Details: BETA1 DOMAIN (UNP RESIDUES 17-139 AND 334-395)
    Synonym: RNAP SUBUNIT BETA,RNA POLYMERASE SUBUNIT BETA,TRANSCRIPTASE SUBUNIT BETA,RNAP SUBUNIT BETA,RNA POLYMERASE SUBUNIT BETA, TRANSCRIPTASE SUBUNIT BETA
 
Molecule 2 - CARD
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TTHA0168
    Organism Scientific: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / DSM 579)
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:60 , LYS B:61 , GLU B:67 , PRO B:102 , TYR B:103binding site for residue EDO B 201
2AC2SOFTWAREASN B:101 , SER B:143 , LEU B:144 , GLU B:145 , HOH B:302binding site for residue EDO B 202
3AC3SOFTWAREARG B:60 , GLY B:100 , LEU B:135 , GLU B:139 , EDO B:204 , EDO B:205binding site for residue EDO B 203
4AC4SOFTWAREPRO B:13 , PRO B:14 , GLY B:16 , LEU B:97 , ALA B:98 , EDO B:203 , HOH B:325binding site for residue EDO B 204
5AC5SOFTWAREGLY B:16 , VAL B:17 , LEU B:135 , GLU B:138 , EDO B:203 , HOH B:349binding site for residue EDO B 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XAX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:52 -Pro A:53
2Pro B:13 -Pro B:14

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XAX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XAX)

(-) Exons   (0, 0)

(no "Exon" information available for 4XAX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...........hhhhhhhhhh.eee.hhhhhheeeeeeeeee.....hhhhhhh.....eeeeeeeeeeee.....eeeeeeeeeeee........hhhhh.ee.......hhhhhhhhhhhhhhhhhh.hhhhhh........hhhhhh.hhhhhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xax A  17 PLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPFSQDECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHLPLMTEDGSFIINGADRVIVSQGGRTVGELMADQFRVGLARLARGVRERMVMGSPDTLTPAKLVNSRPLEAALREFFSRSQLS 392
                                    26        36        46        56        66        76        86        96       106       116       126       136  ||   338       348       358       368       378       388    
                                                                                                                                                    139|                                                            
                                                                                                                                                     332                                                            


Chain B from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee...eeeeeeeeeeeee..eeeeeeeee......eeeee...hhhhh.ee.....hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xax B   3 EFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRKALAPEEVPVILDLLKNGRMPLPKQWAARHRKTSEILADGNPYRIAQMAGQLRAWEVERGLPDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEEAWG 160
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XAX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XAX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XAX)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPOB_THEAQ | Q9KWU7: 1hqm 1i6v 1l9u 1l9z 1ynj 1ynn 2gho 3mlq 4xln 4xlp 4xlq 4xlr 4xls 5tjg
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(-) Related Entries Specified in the PDB File

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