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(-) Description

Title :  CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS CARD
 
Authors :  D. B. Srivastava, L. F. Westblade, E. A. Campbell, S. A. Darst
Date :  11 Jun 13  (Deposition) - 31 Jul 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transcription Regulator, Rna Polymerase, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. B. Srivastava, K. Leon, J. Osmundson, A. L. Garner, L. A. Weiss, L. F. Westblade, M. S. Glickman, R. Landick, S. A. Darst, C. L. Stallings, E. A. Campbell
Structure And Function Of Card, An Essential Mycobacterial Transcription Factor.
Proc. Natl. Acad. Sci. Usa V. 110 12619 2013
PubMed-ID: 23858468  |  Reference-DOI: 10.1073/PNAS.1308270110

(-) Compounds

Molecule 1 - CARD
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: TTH_PET_SUMO_CARD
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CARD, TTHA0168
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4L5G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L5G)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:13 -Pro A:14
2Pro B:13 -Pro B:14

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L5G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L5G)

(-) Exons   (0, 0)

(no "Exon" information available for 4L5G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee.....eeeeeeeeeeee..eeeeeeeeee....eeeeee..hhhhhh.ee..hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l5g A   3 EFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRKALAPEEVPVILDLLKNGRmPLPKQWAARHRKTSEILADGNPYRIAQmAGQLRAWEVERGLPDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEEAWGEELN 164
                                    12        22        32        42        52        62        72       |82        92       102     | 112       122       132       142       152       162  
                                                                                                        80-MSE                     108-MSE                                                    


Chain B from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee...eeeeeeeee..........eeeeeehhh.eeeeee..hhhhhh.ee..hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l5g B   0 SmKEFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRKALAPEEVPVILDLLKNGRmPLPKQWAARHRKTSEILADGNPYRIAQmAGQLRAWEVERGLPDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEEAWG 160
                             |       9        19        29        39        49        59        69        79|       89        99       109       119       129       139       149       159 
                             1-MSE                                                                         80-MSE                     108-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L5G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L5G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L5G)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4L5G)

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  Cis Peptide Bonds
    Pro A:13 - Pro A:14   [ RasMol ]  
    Pro B:13 - Pro B:14   [ RasMol ]  
 
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 Related Entries

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        Q5SLX5_THET8 | Q5SLX5: 4xax

(-) Related Entries Specified in the PDB File

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