4XAQ - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   MGLUR2 ECD AND MGLUR3 ECD WITH LIGANDS

Authors :   D. K. Clawson

Date :   15 Dec 14 (Deposition) - 04 Feb 15 (Release) - 11 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.21

Chains :   Asym./Biol. Unit : A,B

Keywords :   Mglur2 Mglur3, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. A. Monn, L. Prieto, L. Taboada, C. Pedregal, J. Hao, M. R. Reinhard, S. S. Henry, P. J. Goldsmith, C. D. Beadle, L. Walton, T. Man, H. Rudyk, B. Clark, D. Tupper, S. R. Baker, C. Lamas, C. Montero, A. Marcos, J. Blanco, M. Bures, D. K. Clawson, S. Atwell, F. Lu, J. Wang, M. Russell B. A. Heinz, X. Wang, J. H. Carter, C. Xiang, J. T. Catlow, S. Swanson, H. Sanger, L. M. Broad, M. P. Johnson, K. L. Knopp, R. M. Simmons, B. G. Johnson, D. B. Shaw, D. L. Mckinzie
Synthesis And Pharmacological Characterization Of C4-Disubstituted Analogs Of 1S, 2S, 5R, 6S-2-Aminobicyclo[3. 1. 0]Hexane-2, 6-Dicarboxylate: Identification Of A Potent, Selective Metabotropic Glutamat Receptor Agonist And Determination Of Agonist-Bound Human Mglu2 And Mglu3 Amino Terminal Domain Structures.
J. Med. Chem. V. 58 1776 2015
PubMed-ID: 25602126 | Reference-DOI: 10.1021/JM501612Y

Molecule 1 - METABOTROPIC GLUTAMATE RECEPTOR 2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	UNIDENTIFIED BACULOVIRUS
	Expression System Taxid	:	10469
	Fragment	:	UNP RESIDUES 2-493
	Gene	:	GRM2, GPRC1B, MGLUR2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	MGLUR2

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 7)

No.	Name	Count	Type	Full Name
1	40F	2	Ligand/Ion	(1S,2S,5R,6S)-2-AMINOBICYCLO[3.1.0]HEXANE-2,6-DICARBOXYLIC ACID
2	CL	3	Ligand/Ion	CHLORIDE ION
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:57 , ARG A:61 , SER A:143 , TYR A:144 , SER A:145 , ALA A:166 , SER A:167 , THR A:168 , TYR A:216 , ASP A:295 , LYS A:377 , HOH A:735 , HOH A:787	binding site for residue 40F A 601
2	AC2	SOFTWARE	ARG A:442 , ASP A:444 , ARG A:445 , HOH A:828 , HOH A:849 , ARG B:354	binding site for residue SO4 A 602
3	AC3	SOFTWARE	SER A:91 , SER A:143 , TYR A:144 , VAL A:147	binding site for residue CL A 603
4	AC4	SOFTWARE	TYR A:144 , ARG A:271 , GLU A:273	binding site for residue CL A 604
5	AC5	SOFTWARE	ARG B:57 , ARG B:61 , SER B:143 , TYR B:144 , SER B:145 , ALA B:166 , SER B:167 , THR B:168 , TYR B:216 , ASP B:295 , LYS B:377 , HOH B:841 , HOH B:847	binding site for residue 40F B 601
6	AC6	SOFTWARE	ARG A:354 , ARG B:442 , ASP B:444 , ARG B:445	binding site for residue SO4 B 602
7	AC7	SOFTWARE	SER B:91 , SER B:143 , TYR B:144 , VAL B:147	binding site for residue CL B 603

Asymmetric/Biological Unit

No.	Residues
1	A:50	-	A:92
2	A:355	-	A:362
3	A:400	-	A:407
4	B:50	-	B:92
5	B:355	-	B:362
6	B:400	-	B:407

Asymmetric/Biological Unit

No.	Residues
1	Gly A:141	-	Gly A:142
2	Arg A:411	-	Pro A:412
3	Gly B:141	-	Gly B:142
4	Arg B:411	-	Pro B:412

(no "SAP(SNP)/Variant" information available for 4XAQ)

(no "PROSITE Motif" information available for 4XAQ)

(no "Exon" information available for 4XAQ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...eeeeeee..eee......eeee....hhhhhhhhhhhhhhhhhh........eeeeeee...hhhhhhhhhhhhhh.......eee...hhhhhhhhhhhhhhhh..eee....hhhhhh......eee...hhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhh....eeee......hhhhhh.hhhhhh..eeeee......hhhhhhhh..........hhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhhhhh.ee..........ee...........eeeeeeee.....eeeeeeeee...eee.hhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xaq A  22 AKKVLTLEGDLVLGGLFPVHQKGGPAEDCGPVNEHRGIQRLEAMLFALDRINRDPHLLPGVRLGAHILDSCSKDTHALEQALDFVRASLTAITGVIGGSYSDVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFFQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFELEARARNISVATSEKVGRAMSRAAFEGVVRALLQKPSARVAVLFTRSEDARELLAASQRLNASFTWVASDGWGALEEVVAGSEGAAEGAITIELASYPISDFASYFQSLDPWNNSRNPWFREFWEQRFRCSFRQRDCAAHSLRAVPFEQESKIMFVVNAVYAMAHALHNMHRALCPNTTRLCDAMRPVNGRRLYKDFVLNVKFDAPFRPADTHNEVRFDRFGDGIGRYNIFTYLRAGSGRYRYQKVGYWAEGLTLDTSLIPW 487
                                    31        41        51        61        71        81        91       101       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484   
                                                                                                                  110|                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                   134

Chain B from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeeeeee..eee......eeee....hhhhhhhhhhhhhhhh..........eeeeeee...hhhhhhhhhhhhhhhhh....eee...hhhhhhhhhhhhhhhh..eee....hhhhhh......eee...hhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhh....eeee......hhhhhh.hhhhhh..eeeee....hhhhhhhhhh..........hhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhhhh.eee........eee..........eeeeeeee.....eeeeeeeee...eee.hhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xaq B  23 KKVLTLEGDLVLGGLFPVHQKGGPAEDCGPVNEHRGIQRLEAMLFALDRINRDPHLLPGVRLGAHILDSCSKDTHALEQALDFVRASLTAITGVIGGSYSDVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFFQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFELEARARNISVATSEKVGRAMSRAAFEGVVRALLQKPSARVAVLFTRSEDARELLAASQRLNASFTWVASDGWGALEEVVAGSEGAAEGAITIELASYPISDFASYFQSLDPWNNSRNPWFREFWEQRFRCSFRQRDCAAHSLRAVPFEQESKIMFVVNAVYAMAHALHNMHRALCPNTTRLCDAMRPVNGRRLYKDFVLNVKFDAPFRPAHNEVRFDRFGDGIGRYNIFTYLRAGSGRYRYQKVGYWAEGLTLDTSLIPWAS 489
                                    32        42        52        62        72        82        92       102       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435|      447       457       467       477       487  
                                                                                                                 110|                                                                                                                                                                                                                                                                                                          435|                                                   
                                                                                                                  134                                                                                                                                                                                                                                                                                                           438

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4XAQ)

(no "CATH Domain" information available for 4XAQ)

(no "Pfam Domain" information available for 4XAQ)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Arg A:411 - Pro A:412	[ RasMol ]
		Arg B:411 - Pro B:412	[ RasMol ]
		Gly A:141 - Gly A:142	[ RasMol ]
		Gly B:141 - Gly B:142	[ RasMol ]

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	GRM2_HUMAN \| Q14416	:	4xas 5cni 5cnj 5kzn 5kzq

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

SS Bonds (6, 6)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (25, 25)

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