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(-) Description

Title :  PLK-1 POLO-BOX DOMAIN IN COMPLEX WITH BIOACTIVE IMIDAZOLIUM-CONTAINING PHOSPHOPEPTIDE MACROCYCLE 3C
 
Authors :  R. A. Grant, W. -J. Qian, M. B. Yaffe, T. R. Burke
Date :  11 Dec 14  (Deposition) - 29 Jul 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Macrocycle Inhibitor Complex, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. J. Qian, J. E. Park, R. Grant, C. C. Lai, J. A. Kelley, M. B. Yaffe, K. S. Lee, T. R. Burke
Neighbor-Directed Histidine N ( Tau )-Alkylation: A Route T Imidazolium-Containing Phosphopeptide Macrocycles.
Biopolymers V. 104 663 2015
PubMed-ID: 26152807  |  Reference-DOI: 10.1002/BIP.22698

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PLK1
    Chains: A
    EC Number: 2.7.11.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: POLO BOX DOMAIN RESIDUES 371-603
    Gene: PLK1, PLK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: POLO-LIKE KINASE 1,PLK-1,SERINE/THREONINE-PROTEIN KINASE 13, STPK13
 
Molecule 2 - PHOSPHOPEPTIDE MACROCYCLE 3C
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synonym: 1-[3-(2,4-DIAMINO-6-METHYLQUINAZOLIN-7-YL)PHENYL]ETHANONE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
14KY1Mod. Amino Acid(4R)-1-ACETYL-4-(OCT-7-EN-1-YLOXY)-L-PROLINE
256A1Mod. Amino Acid3-(8-PHENYLOCTYL)-L-HISTIDINE
3NH21Mod. Amino AcidAMINO GROUP
4TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (0, 0)

(no "Site" information available for 4X9V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X9V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4X9V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X9V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X9V)

(-) Exons   (0, 0)

(no "Exon" information available for 4X9V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh........hhhhhhhhhhh....eeeeeee....eeeeee....eeeee....eeee.....eeeee.....eeeee....hhhhhhhhhhhhhhhhhhhhh..............eeeeee...eeeeee....eeeee.....eeeee....eeeee.....eeeeehhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x9v A 372 CHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITARLPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSRS 595
                                   381       391       401       411       421       431       441       451       461       471       481       491      |508       518       528       538       548       558       568       578       588       
                                                                                                                                                        498|                                                                                         
                                                                                                                                                         506                                                                                         


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4x9v B   1 xLxStx   6
                            | | ||
                            1-4KY|
                              3-56A
                                5-TPO
                                 6-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X9V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X9V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X9V)

(-) Gene Ontology  (73, 73)

Asymmetric/Biological Unit(hide GO term definitions)

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  4x9v
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  PLK1_HUMAN | P53350
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  2.7.11.21
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PLK1_HUMAN | P53350: 1q4k 1q4o 1umw 2ogq 2ojx 2ou7 2owb 2rku 2v5q 2yac 3bzi 3c5l 3fc2 3fvh 3hih 3hik 3kb7 3p2w 3p2z 3p34 3p35 3p36 3p37 3q1i 3rq7 3thb 4a4l 4a4o 4dfw 4e67 4e9c 4e9d 4h5x 4h71 4hab 4hco 4hy2 4j52 4j53 4lkl 4lkm 4o56 4o6w 4o9w 4rcp 4whh 4whk 4whl 4x9r 4x9w 5j19 5ta6 5ta8

(-) Related Entries Specified in the PDB File

4x9r SAME PROTEIN DOMAIN WITH DIFFERENT LIGAND
4x9w