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(-) Description

Title :  SELECTION OF FRAGMENTS FOR KINASE INHIBITOR DESIGN: DECORATION IS KEY
 
Authors :  P. Czodrowski, G. Hoelzemann, G. Barnickel, H. Greiner, D. Musil
Date :  26 Nov 14  (Deposition) - 28 Oct 15  (Release) - 28 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Protein Kinase, Inhibitor Complex, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Czodrowski, G. Holzemann, G. Barnickel, H. Greiner, D. Musil
Selection Of Fragments For Kinase Inhibitor Design: Decoration Is Key.
J. Med. Chem. V. 58 457 2015
PubMed-ID: 25437144  |  Reference-DOI: 10.1021/JM501597J

(-) Compounds

Molecule 1 - TGF-BETA RECEPTOR TYPE-1
    Chains: A
    EC Number: 2.7.11.30
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 200-503
    Gene: TGFBR1, ALK5, SKR4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TGFR-1,ACTIVIN A RECEPTOR TYPE II-LIKE PROTEIN KINASE OF 53KD,ACTIVIN RECEPTOR-LIKE KINASE 5,ALK5,SERINE/THREONINE-PROTEIN KINASE RECEPTOR R4,SKR4,TGF-BETA TYPE I RECEPTOR,TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I,TBETAR-I

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
13WJ1Ligand/Ion4-AMINO-8-(4-AMINOPHENYL)PYRIDO[2,3-D]PYRIMIDIN-5(8H)-ONE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:211 , ALA A:230 , LEU A:260 , SER A:280 , ASP A:281 , TYR A:282 , HIS A:283 , SER A:287 , ASP A:290 , LEU A:340 , HOH A:815 , HOH A:861binding site for residue 3WJ A 601
2AC2SOFTWARELYS A:337 , ARG A:377 , ASP A:435 , HOH A:752 , HOH A:806 , HOH A:817 , HOH A:877 , HOH A:904binding site for residue SO4 A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X2F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4X2F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X2F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X2F)

(-) Exons   (0, 0)

(no "Exon" information available for 4X2F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeeeeee....eeeeeee..eeeeeeeee..hhhhhhhhhhhhh...........eeeeeeee....eeeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..........ee....hhh.eee.....eee.hhhhheeee....ee.........hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x2f A 199 GTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEGI 501
                                   208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X2F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X2F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X2F)

(-) Gene Ontology  (99, 99)

Asymmetric/Biological Unit(hide GO term definitions)

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  4x2f
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  TGFR1_HUMAN | P36897
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  2.7.11.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TGFR1_HUMAN | P36897: 1b6c 1ias 1py5 1rw8 1tbi 1vjy 2l5s 2pjy 2wot 2wou 2x7o 3faa 3gxl 3hmm 3kcf 3kfd 3tzm 4x0m 4x2g 4x2j 4x2k 4x2n 5e8s 5e8t 5e8u 5e8w 5e8x 5e8z 5e90 5fri 5usq

(-) Related Entries Specified in the PDB File

4x2g