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(-) Description

Title :  CRYSTAL STRUCTURE OF P. AERUGINOSA AMPC
 
Authors :  A. D. Ferguson
Date :  18 Nov 14  (Deposition) - 05 Aug 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.28
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Lactamase, Inhibitor, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Mckinney, F. Zhou, C. J. Eyermann, A. D. Ferguson, D. B. Prince, J. Breen, R. A. Giacobbe, S. Lahiri, J. C. Verheijen
4, 5-Disubstituted 6-Aryloxy-1, 3-Dihydrobenzo[C][1, 2]Oxaboroles Are Broad-Spectrum Serine Beta-Lactamase Inhibitors
Acs Infect. Dis. V. 1 310 2015
PubMed: search  |  Reference-DOI: 10.1021/ACSINFECDIS.5B00031

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: PSEUDOMONAS AERUGINOSA PAO1
    Expression System Taxid: 208964
    Gene: AMPC, PA4110
    Organism Scientific: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228
    Synonym: CEPHALOSPORINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
13VT1Ligand/Ion[(3R)-1-HYDROXY-4,5-DIMETHYL-6-(PYRAZIN-2-YLOXY)-1,3-DIHYDRO-2,1-BENZOXABOROL-3-YL]ACETIC ACID
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3GOL4Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:175 , TYR A:177 , GLU A:299 , MET A:318 , LYS A:342 , THR A:343 , 3VT A:406 , HOH A:678 , HOH A:704 , HOH A:708binding site for residue GOL A 401
2AC2SOFTWARETHR A:316 , ALA A:319 , ASN A:373 , 3VT A:406 , HOH A:732 , HOH A:744 , HOH A:762 , HOH A:846binding site for residue GOL A 402
3AC3SOFTWAREASP A:160 , TRP A:275 , HOH A:502 , HOH A:532 , HOH A:544binding site for residue GOL A 403
4AC4SOFTWAREGLU A:269 , ARG A:273 , ALA A:276 , GLN A:277 , ASP A:280 , GLN A:321 , PRO A:322 , HOH A:514 , HOH A:518binding site for residue GOL A 404
5AC5SOFTWAREASN A:347 , ASN A:370 , 3VT A:406binding site for residue DMS A 405
6AC6SOFTWARESER A:90 , TYR A:177 , ASN A:179 , TYR A:249 , THR A:343 , GLY A:344 , SER A:345 , THR A:346 , ASN A:373 , ARG A:376 , GOL A:401 , GOL A:402 , DMS A:405 , HOH A:856binding site for residue 3VT A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WYY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Trp A:303 -Pro A:304

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WYY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WYY)

(-) Exons   (0, 0)

(no "Exon" information available for 4WYY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeeeeee....ee.....eee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh................hhhhhhhhhhhh........ee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...hhhhhhhh....hhhhh........hhhhhhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eee....eeee...hhhhhhhhhhhhhhhh.ee.eeeeeeee....eeeeeeeee..eeeeeeeehhh.eeeeeee....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wyy A  29 APADRLKALVDAAVQPVMKANDIPGLAVAISLKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRFDGISLLDLATYTAGGLPLQFPDSVQKDQAQIRDYYRQWQPTYAPGSQRLYSNPSIGLFGYLAARSLGQPFERLMEQQVFPALGLEQTHLDVPEAALAQYAQGYGKDDRPLRVGPGPLDAEGYGVKTSAADLLRFVDANLHPERLDRPWAQALDATHRGYYKVGDMTQGLGWEAYDWPISLKRLQAGNSTPMALQPHRIARLPAPQALEGQRLLNKTGSTNGFGAYVAFVPGRDLGLVILANRNYPNAERVKIAYAILSGLE 388
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WYY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WYY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WYY)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  4wyy
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  3.5.2.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AMPC_PSEAE | P24735: 2wzx 2wzz 3s1y 3s22 4gzb 4hef 4nk3 4ooy 4wz4 4x68

(-) Related Entries Specified in the PDB File

4wz4 4wz5