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(-) Description

Title :  STRCUTURE OF AVIBACTAM BOUND TO PSEUDOMONAS AERUGINOSA AMPC
 
Authors :  S. D. Lahiri
Date :  03 Oct 12  (Deposition) - 05 Jun 13  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A
Keywords :  B-Lactamase, Hydrolase, Periplasmic Protein, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. D. Lahiri, S. Mangani, T. Durand-Reville, M. Benvenuti, F. De Luca G. Sanyal, J. D. Docquier
Structural Insight Into Potent Broad-Spectrum Inhibition With Reversible Recyclization Mechanism: Avibactam In Complex With Ctx-M-15 And Pseudomonas Aeruginosa Ampc Beta-Lactamases
Antimicrob. Agents Chemother. V. 57 2496 2013
PubMed-ID: 23439634  |  Reference-DOI: 10.1128/AAC.02247-12

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 29-388
    Gene: AMPC, PA4110
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228
    Synonym: CEPHALOSPORINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2NXL1Ligand/Ion(2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2-CARBOXAMIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:160 , TRP A:275 , HOH A:537 , HOH A:660 , HOH A:808BINDING SITE FOR RESIDUE GOL A 401
2AC2SOFTWAREGLU A:269 , ARG A:273 , ALA A:276 , GLN A:277 , ASP A:280 , GLN A:321 , PRO A:322 , HOH A:820BINDING SITE FOR RESIDUE GOL A 402
3AC3SOFTWAREGLY A:89 , SER A:90 , GLN A:146 , TYR A:177 , ASN A:179 , LYS A:342 , THR A:343 , GLY A:344 , SER A:345 , ASN A:373 , HOH A:829 , HOH A:830 , HOH A:832 , HOH A:835 , HOH A:837BINDING SITE FOR RESIDUE NXL A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HEF)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Trp A:303 -Pro A:304

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HEF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HEF)

(-) Exons   (0, 0)

(no "Exon" information available for 4HEF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4hefa_ A: automated matches                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeeeeee....ee.....eee...hhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhh................hhhhhhhhhhhh........ee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...hhhhhhhh....hhhhh........hhhhhhh.eeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..eee....eeee...hhhhhhhhhhhhhhhh.ee.eeeeeeee....eeeeeeeee..eeeeeeeehhh.eeeeeee....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hef A  29 APADRLKALVDAAVQPVMKANDIPGLAVAISLKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRFDGISLLDLATYTAGGLPLQFPDSVQKDQAQIRDYYRQWQPTYAPGSQRLYSNPSIGLFGYLAARSLGQPFERLMEQQVFPALGLEQTHLDVPEAALAQYAQGYGKRDRPLRVGPGPLDAEGYGVKTSAADLLRFVDANLHPERLDRPWAQALDATHRGYYKVGDMTQGLGWEAYDWPISLKRLQAGNSTPMALQPHRIARLPAPQALEGQRLLNKTGSTNGFGAYVAFVPGRDLGLVILANRNYPNAERVKIAYAILSGLE 388
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HEF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HEF)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        AMPC_PSEAE | P24735: 2wzx 2wzz 3s1y 3s22 4gzb 4nk3 4ooy 4wyy 4wz4 4x68

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